BAC Information

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BAC

Clone NameMSMg01-408G09
Chromosome17 (Build37)17 (Build37)
Map Location 22,676,852 - 22,677,43222,792,193 - 22,792,426
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
Downstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408G09.T7 (MSMg01no408_g09.b1)MSMg01-408G09.TJ (MSMg01no408_g09.g1)
ACCAG506126AG506127
length729731
length of high quality
(start - end)
582 (67 - 648)495 (75 - 569)
definitionCHROMAT_FILE: MSMg01no408_g09.b1 PHD_FILE: MSMg01no408_g09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:22 2005CHROMAT_FILE: MSMg01no408_g09.g1 PHD_FILE: MSMg01no408_g09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:24:22 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(22,676,852 - 22,677,432)(22,792,193 - 22,792,426)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACAAATTACAAAGTACGTCTCACTAGAAAGCTCAGTATCACTAG
ATACTGCATTAATGTTATTTGTTCTGAAAAACAAATTTAAAACAACTACT
GCAATTCTTGACCATACAATTTATGTACAGAGTAGAGTGAGCAAGTTCTA
GGCATTGCCATTTTTCCTGAATGAAGAATACAGCCATAAGGAACGTCATC
AAGTCCTATAATTCAATGAAAATATTTGAGCTATCTGTATTGGTACAGTT
CTTCAATCCTAGCATCCTATGTAAGAGGAAGGGAAATCCCATGTAAATCC
AGGCTTGATCTAGTGCCACAATAGCATTATATCTATTTTTGCATACAAGT
GATAAAGGAAATCATCTTTTAGATTATTCTTCTGTAAAGATCCTGGCAAG
TATTAGATAAATAGAATAATCCTCATAAAACCAAGTTATTATTATCTAAA
GATTACTAACAGGGCCAGAGGTACCCACTTCAGAATAATGTGTGCCTAAA
TTGTGACACAGCAGATTTTACCTCTGGTGAATACAATATACCTATTTGGC
AGCACTGTTCATCAATTGGACTTCTTCCCTTGCATCCATGGCAGAGCTGA
ATCAAGACTTCTTAAGACTGTCCCAAAAGTTATCCTGTAGATGCCAGAAG
TTTTAGTGTTCTATAGATGAATGTAGTTN
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGAGCTGTCCCATGCTTTGGTGGAC
TTTATGGAGATTCTTTGTATCCCTTTTGCCCCTTACCCATATTCCTGTAA
AAGAAAACTCTCTGGCTCATCACTTAGCACTTTGTCATTATGTACACTTG
GAGCCAATTTTATTTCTCTTTTTATGATTCATAGATGCATAAATGTGTTA
TATCTCCCCACGAATAGTCTGCCACACACTTTCCCATTCAACATGTACTT
GAGTCTGTAGTTTTTAATTCAAAAGTGTTCATTGAAAAGTTCATGTTGGA
AAAAAAAAGTATTTACTTGTTTCATGTTGTTTTGGATTCATGTCTGATCA
AAAGTTAGAATTTTCACACTAGAGAACCCCAAGAAATGTAAGGAATTTGT
CAAACCTTTATAAAGTAAATAAAATTTAATACCACCTGAAAGCTTTTCCT
TCAGGAAACCCTTTCTTGTGCTTTATTAATTATGTGGCATTCAGCTTTAG
AATTTGCATTCTGGAGTAGACACATACAAATAGCATGAATGTGAGAAGTG
TATAAAGCTGGATCTCATGGTAGAGACAACATTCATGTATATGGTAGGGA
ATTCTTAATAATATGCCGGAAATTAATTTCTTCCCCCTCCAAATTCTCTC
ACATGCCATTTTCAGCAAACATCTTCTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_g09.b1 MSMg01no408_g09.b1 CHROMAT_FILE:
MSMg01no408_g09.b1 PHD_FILE: MSMg01no408_g09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:22 2005
         (582 letters)



>mm_chr17_22676652_22677632
          Length = 981

 Score = 1056 bits (546), Expect = 0.0
 Identities = 573/582 (98%), Gaps = 1/582 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtacgtctcactagaaagctcagtatcactagatactgcattaatgttatttgttctg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 aagtacttctcactagaaagctcagtatcactagatactgcattaatgttatttgttctg 722

                                                                       
Query: 61  aaaaacaaatttaaaacaactactgcaattcttgaccatacaatttatgtacagagtaga 120
           ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 721 aaaaacaaaattaaaacaactactgcaattcttgaccatacaatttctgtacagagtaga 662

                                                                       
Query: 121 gtgagcaagttctaggcattgccatttttcctgaatgaagaatacagccataaggaacgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gtgagcaagttctaggcattgccatttttcctgaatgaagaatacagccataaggaacgt 602

                                                                       
Query: 181 catcaagtcctataattcaatgaaaatatttgagctatctgtattggtacagttcttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 catcaagtcctataattcaatgaaaatatttgagctatctgtattggtacagttcttcaa 542

                                                                       
Query: 241 tcctagcatcctatgtaagaggaagggaaatcccatgtaaatccaggcttgatctagtgc 300
           ||||||||||||| | ||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 541 tcctagcatccta-ggaagaggaagggagttcccatgtaaatccaggcttgatctagtgc 483

                                                                       
Query: 301 cacaatagcattatatctatttttgcatacaagtgataaaggaaatcatcttttagatta 360
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacaatagcattatacctatttttgcatacaagtgataaaggaaatcatcttttagatta 423

                                                                       
Query: 361 ttcttctgtaaagatcctggcaagtattagataaatagaataatcctcataaaaccaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttcttctgtaaagatcctggcaagtattagataaatagaataatcctcataaaaccaagt 363

                                                                       
Query: 421 tattattatctaaagattactaacagggccagaggtacccacttcagaataatgtgtgcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 362 tattattatctaaagattactaacagggccagaggtacccacttcagaataatgtgtgct 303

                                                                       
Query: 481 taaattgtgacacagcagattttacctctggtgaatacaatatacctatttggcagcact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaattgtgacacagcagattttacctctggtgaatacaatatacctatttggcagcact 243

                                                     
Query: 541 gttcatcaattggacttcttcccttgcatccatggcagagct 582
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gttcatcaattggacttcttcccttgcatccatggcagagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space:   555412
Effective search space used:   555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no408_g09.g1 MSMg01no408_g09.g1 CHROMAT_FILE:
MSMg01no408_g09.g1 PHD_FILE: MSMg01no408_g09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:22 2005
         (495 letters)



>mm_chr17_22791733_22792626
          Length = 894

 Score =  439 bits (227), Expect = e-127
 Identities = 233/235 (99%), Gaps = 1/235 (0%)
 Strand = Plus / Plus

                                                                       
Query: 261 aaaagttcatgttggaaaaaaaaagtatttacttgtttcatgttgttttggattcatgtc 320
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 461 aaaagttcatgttggaaaaaaaa-gtatttacttgtttcatgttgttttggattcatgtc 519

                                                                       
Query: 321 tgatcaaaagttagaattttcacactagagaaccccaagaaatgtaaggaatttgtcaaa 380
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tgatcaaaagttagaatcttcacactagagaaccccaagaaatgtaaggaatttgtcaaa 579

                                                                       
Query: 381 cctttataaagtaaataaaatttaataccacctgaaagcttttccttcaggaaacccttt 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cctttataaagtaaataaaatttaataccacctgaaagcttttccttcaggaaacccttt 639

                                                                  
Query: 441 cttgtgctttattaattatgtggcattcagctttagaatttgcattctggagtag 495
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cttgtgctttattaattatgtggcattcagctttagaatttgcattctggagtag 694


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space:   428740
Effective search space used:   428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)