NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGTCTCACTTCAGACAAACAAAGAAACAAAACTAGTAAAAGAT
ACATATTCTTGTATACTAATTTTGTCTTCATTTTTAATATACATATATAA
GCACACACATGCACACACACACATAACCATATCAGTCAGTCATTATTCCA
TTTCTTAGCAGCAAATGGCTACAATAATGCTAGATTCCCCCTTCCAGTCC
TTTATGATCATGAAGCACTCACACAGATGCCATTATAACCCATATAGTCA
TTCTCTACCTAGGTTTATGCTCACCAACATCTCTTTGCCAACAAAGTGAG
CACTTGGCTTTAATGAAATGATTCTTCTCTTAGTTTCTGAAATTACAAAG
GAGTAAAAAAGTTAATTTGTATTATGAAAAACCTAGAACAAAAACGAAAG
GTGGATTTCTAATATAGGATATAGAGTTTCTGACAAGAAGATACCTCTTT
CTACAAAGTCTTATTTGATAAAACTACAAATGAGTCTCTAACCCAGCATC
CTGTTTCTACTTGTGGTTCCTTCTAACCCTGCTCTTAATTAGAATTATAA
GAGAAGAACCCCCCCAGAAGGCCCAGGAAAATCTACAGTGCTAATAGACC
ATTTTTAGTACAGCGTAGAATCTACCTAATTACGTAGTGGAAAGGATTGG
TTTGTCTCCTATAATAACTTTGAAAATTAATGTCATTTAAGTCTCACTGT
ACTCGTTACTTTTTACCTACACAAAAAGTAATA

ATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAA
GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT
CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCA
TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCA
ATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA
CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG
TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT
GAAATTCCTAGCCAAATGTATGGAACTGCTAGGGCATCATCCTGAGTGGA
GGTACACATTTCCTAAGGAACTTCCCCTATATGTACTCTCTGTTAAGTGG
AAATAACCCCCCACCTCTCGGATTCCTTGAATTTTTAATATCTTTCCTTA
ATACCCTTGTATCTTATACTACATGATACCTGAAGCTGTTGCCTTTTGCG
CCCCCCCTTTAATTTTGAAAAN

Query= MSMg01no409_p12.b1 MSMg01no409_p12.b1 CHROMAT_FILE:
MSMg01no409_p12.b1 PHD_FILE: MSMg01no409_p12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:32 2005
         (496 letters)



>mm_chr17_51587832_51588727
          Length = 896

 Score =  861 bits (445), Expect = 0.0
 Identities = 482/499 (96%), Gaps = 9/499 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtctcac-------ttcagacaaacaaagaaacaaaactagtaaaagataca 57
           |||||||||||||||         |||||||||||| || |||||||||||| |||||||
Sbjct: 718 gaattcctgtctcacaaacaaa--cagacaaacaaacaagcaaaactagtaagagataca 661

                                                                       
Query: 58  tattcttgtatactaattttgtcttcatttttaatatacatatataagcacacacatgca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tattcttgtatactaattttgtcttcatttttaatatacatatataagcacacacatgca 601

                                                                       
Query: 118 cacacacacataaccatatcagtcagtcattattccatttcttagcagcaaatggctaca 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 cacacacacataaccatatcagtcagtcattattccatttcttagcagcaaatggctaca 541

                                                                       
Query: 178 ataatgctagattcccccttccagtcctttatgatcatgaagcactcacacagatgccat 237
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 540 ataatgctagattcccccttccagtgctttatgatcatgaagcactcacacagatgccat 481

                                                                       
Query: 238 tataacccatatagtcattctctacctaggtttatgctcaccaacatctctttgccaaca 297
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tataacccatatagttattctctacctaggtttatgctcaccaacatctctttgccaaca 421

                                                                       
Query: 298 aagtgagcacttggctttaatgaaatgattcttctcttagtttctgaaattacaaaggag 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 aagtgagcacttggctttaatgaaatgattcttctcttagtttctgaaattacaaaggag 361

                                                                       
Query: 358 taaaaaagttaatttgtattatgaaaaacctagaacaaaaacgaaaggtggatttctaat 417
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 360 taaaaaggttaatttgtattatgaaaaacctagaacaaaaatgaaaggtggatttctaat 301

                                                                       
Query: 418 ataggatatagagtttctgacaagaagatacctctttctacaaagtcttatttgataaaa 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ataggatatagagtttctgacaagaagatacctctttctacaaagtcttatttgataaaa 241

                              
Query: 478 ctacaaatgagtctctaac 496
           |||||| ||||||||||||
Sbjct: 240 ctacaagtgagtctctaac 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)