BAC Information

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BAC

Clone NameMSMg01-410E08
Chromosome17 (Build37)
Map Location 79,232,203 - 79,232,650
singlet/doubletsinglet
Overlap geneHeatr5b
Upstream geneLOC668795, LOC383275, Crim1, Fez2, LOC100043888, Hdac1-ps, Vit, Strn
Downstream gene2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410E08.T7 (MSMg01no410_e08.b1)MSMg01-410E08.TJ (MSMg01no410_e08.g1)
ACCAG507558AG507559
length764737
length of high quality
(start - end)
199 (81 - 279)448 (84 - 531)
definitionCHROMAT_FILE: MSMg01no410_e08.b1 PHD_FILE: MSMg01no410_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:57 2005CHROMAT_FILE: MSMg01no410_e08.g1 PHD_FILE: MSMg01no410_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:26:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATGACTTGCCTCAACTGGACCCTGGGTTATTCTTTAA
AGAGGGACACAAACTTTGGGGATTAGTGTGAGATCTGGGCAGAGTTAGGG
GAAGGAATGGGGATAAAATTATCAAAATACATTGGACACATCTATAAAAT
GCTCAAAGAATAAAAATATTTCAAAACGTATGAAGTGTTTAATATATTTA
GCTGGTTTCAGTAAAGTTTTACATGGGTGGNACAGNCNAGNNNAACCAGA
TTACAGCCTATATAATTTTTTCATTTTGTTTAATAACTTTTTTGTTTTCT
TTTCCAACAGGGAACCATATAAAGGAAAATATTACCCCCCCTTATGGAGA
AAATTTAACCTGGCCGTGGTCCCCCATCGATTGAAACAAACCTCCAATAA
AAACAACCTCATTTAAGGGGGTAATTCCCAATTTTAAATCCCCTTTTTGT
GGGGGGGGGGGAAAAAGGGCACCCCTCTATCCGGTTTAAACCTCCCCATT
TTTCCCCATTTGGTAAACCAAAAAAACTTTCATTTGGGGACCCCCCCCCC
CCTTATTTTTAAAATGTGGGGCTTTCCCCGCGCTTTAATTGGGCGGCGGT
GGGGGGGCTAAATAATCCCTCAGACACGGGTGTTCTTTTTTTATTACTAG
GATCTCTCCGCGGTGTTCCCTTCCTCCCGCGGTTTCCCCATTTCCTCCTT
GATCCTCCTCCTTT
AAAAAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCACATAGCTGGGAAT
GACTGTGAACTTTCCTTTGGAAGGGAAATAACAAATGCCTAATTACAGAA
GATTTAAGAGACAAAAAAAAATCTAGTTAAAGGTTACCAGGGTATCCGTG
TCTTTCTATTACTGTCTTTCTAGCAATTAACATGATTTTAACAGGCAGCA
GCAACAACAGCACATAGCACGAGTGTACAACGGCCACAACAACAGGAAAA
GAACCTGGACGAAACCTGAAAGCCAAGGGTGAAACCTAAAATGGATTCCC
AGTCTTTCAGTCAAGAATCAATCTGCACCTAGAAACAGAAGGACTTCCTA
GTTGACTGCCCGAGGCTAGACTGGAGTACACCTGTCATGCCCAGCATTTC
GGCACTCAGGCAGCTAATGCAGGACGGCTGGATGTTTGAAGCCAGTCTGG
GATACACAGTGAGCGGCAGGTCAGCCAGGAATAACTAATAAAACGATCAA
AGTAAAATCAAAGCCAAGAAACGAACAAAATCTTCTACCCTCCTTTCCTT
CATTCTAGAAGAAAGCTAAAGGCTTGCTTTCTGGGCGGGGGCGGAGATAA
CCTGCCCTTTCTTTCCCTACCCCCTATCCCCCTTGTCCTCCCTTTTCCCC
GATTCGCCCTTTTCTTCTTCCTGCTTTTTCCATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_e08.g1 MSMg01no410_e08.g1 CHROMAT_FILE:
MSMg01no410_e08.g1 PHD_FILE: MSMg01no410_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:58 2005
         (448 letters)



>mm_chr17_79232003_79232850
          Length = 848

 Score =  851 bits (440), Expect = 0.0
 Identities = 446/448 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcacatagctgggaatgactgtgaactttcctttggaagggaaataacaaatgcctaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacatagctgggaatgactgtgaactttcctttggaagggaaataacaaatgcctaat 260

                                                                       
Query: 61  tacagaagatttaagagacaaaaaaaaatctagttaaaggttaccagggtatccgtgtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacagaagatttaagagacaaaaaaaaatctagttaaaggttaccagggtatccgtgtct 320

                                                                       
Query: 121 ttctattactgtctttctagcaattaacatgattttaacaggcagcagcaacaacagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctattactgtctttctagcaattaacatgattttaacaggcagcagcaacaacagcac 380

                                                                       
Query: 181 atagcacgagtgtacaacggccacaacaacaggaaaagaacctggacgaaacctgaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagcacgagtgtacaacggccacaacaacaggaaaagaacctggacgaaacctgaaagc 440

                                                                       
Query: 241 caagggtgaaacctaaaatggattcccagtctttcagtcaagaatcaatctgcacctaga 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagggggaaacctaaaatggattcccagtctttcagtcaagaatcaatctgcacctaga 500

                                                                       
Query: 301 aacagaaggacttcctagttgactgcccgaggctagactggagtacacctgtcatgccca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacagaaggacttcctagttgactgcccgaggctagactggagtacacctgtcatgccca 560

                                                                       
Query: 361 gcatttcggcactcaggcagctaatgcaggacggctggatgtttgaagccagtctgggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcatttcggcactcaggcagctaatgcaggacggctggatgtttgaagccagtctgggat 620

                                       
Query: 421 acacagtgagcggcaggtcagccaggaa 448
           ||||||||||||||||| ||||||||||
Sbjct: 621 acacagtgagcggcaggccagccaggaa 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)