BAC Information

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BAC

Clone NameMSMg01-410G21
Chromosome17 (Build37)
Map Location 56,337,014 - 56,526,304
singlet/doubletdoublet
Overlap geneDpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e
Downstream genePtprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-410G21.T7 (MSMg01no410_g21.b1)MSMg01-410G21.TJ (MSMg01no410_g21.g1)
ACCAG507680AG507681
length748751
length of high quality
(start - end)		249 (78 - 326)415 (85 - 499)
definitionCHROMAT_FILE: MSMg01no410_g21.b1 PHD_FILE: MSMg01no410_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:10 2005CHROMAT_FILE: MSMg01no410_g21.g1 PHD_FILE: MSMg01no410_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:27:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,526,056 - 56,526,304)(56,337,014 - 56,337,428)
sequence
GGGGNNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCACTTTGTATACCAGGTTGGCCTCGAACTCAGAAATCC
GCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGTGCCACCATGC
CCAGCTGACACCTGAGTTCTATGAAGTCTCATAGCTGTGGCTCATGTTCA
GCTCTGAGGGCTATCCTTGGCCTCTCAGAATCTCAAACCCTGAGGAGTTG
CAGGAGGCAAGGAGTAGGATGGACACCTGGAGTGAGGGGCTGAGCCTAGC
CATGTAGGTCTCCCTCTTAGAAAATGGAGTCTGGTTCCTCCCCAAACCTG
TTACCTACACTGCCACCTCTAACTAGGGACATGGGCACTATGGGTGATCG
ATCACACTACTGTAAGGAGCAGGGCAGTACGGTCTACTCATCCTTAGGAG
CAGGGCATCTGGTATTGGCTTTGGCCCTATGAATGCTTGCAAGGGACCTG
CCAGCTCTCTGAAATGCAAGGGTACCAGGATTACATCACCAAGTAAGTAG
CAGCAAGCATTCAGATGCCCGGGGAAAGGGTCTGAGGCTCTGCCTGGGAT
GACCATAAAACTCCTGTTTTTTAAGCCACAATATTTAATAAAGTGGGAGC
AGAAGTAGTTCCCTTTTTTTCCCCTCTTTCCCGGCTTTGAACCTTGTCCC
TCATTGAATTGCGCCGTTCCCCTCCCTCAATTTTCCCTTATTATTTTG

CGAATGNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGCACCCCGGCAGG
GTACACAGAGTCGGTGACATTCTTGTGACACTGAGCCACTGCCAGGAGAG
ACATGGAGACAGAGCCCTGGTCAGCACCTTGGGTCACTTGGTGCCAAGCA
GCCAGGACATGAGGCCTGGTATCAGGCCCTCAGAGATGGCATCCCAGTCA
CTGTGTCCCTTGAGCCCATGGCTGCCACAGCCTGCTGTGGTACCATGTGG
CACTTCTTAACTATGCTGCTTACAGAAGATGACCCGTCTTCAAGGAAGGC
TTGAGCATTGTCTGGGGACATGTGTAGCTGTCACAACTGGGGGAGCTGCT
AGCAGGCAGCAAGCAGAACAGGAATGCTGCTCTCTGAATGTACCTCTGGA
GACTGGGTCTGTGCAAAGGCCCTGGGGTAGAGGACACAGCTCCACTGCAC
AGCCTAAAAGTGCCCCCAGCCCCTGGAGGTCACCTGCCATCATGCATGAT
TTTCTCTACATCCCCCCGGGCCCGAGACACCATCCTTAATTCCCCCCTGC
ATAATTACTTGAAGGCCCAAACCCCCCCGGGGAGAAGGGGGTTCCCGGGG
AATCCCCCCCCTCTCTTTCCATTTTTCTTTCCTCAAATTTACAATTTTGT
CCCCTCAAACCATCTTTCTTGGTTTAATAACCTAATAATTCCTATGGTCC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no410_g21.b1 MSMg01no410_g21.b1 CHROMAT_FILE:
MSMg01no410_g21.b1 PHD_FILE: MSMg01no410_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:10 2005
         (249 letters)



>mm_chr17_56525777_56526425
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gttggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gttggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggattaaaggca 469

                                                                       
Query: 61  tgtgccaccatgcccagctgacacctgagttctatgaagtctcatagctgtggctcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tgtgccaccatgcccagctgacacctgagttctatgaagtctcatagctgtggctcatgt 409

                                                                       
Query: 121 tcagctctgagggctatccttggcctctcagaatctcaaaccctgaggagttgcaggagg 180
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 408 tcagctctgagggctatccttggcctcttagaatctcaaaccctgaggagttgcaggagg 349

                                                                       
Query: 181 caaggagtaggatggacacctggagtgaggggctgagcctagccatgtaggtctccctct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 caaggagtaggatggacacctggagtgaggggctgagcctagccatgtaggtctccctct 289

                    
Query: 241 tagaaaatg 249
           |||||||||
Sbjct: 288 tagaaaatg 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no410_g21.g1 MSMg01no410_g21.g1 CHROMAT_FILE:
MSMg01no410_g21.g1 PHD_FILE: MSMg01no410_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:27:10 2005
         (415 letters)



>mm_chr17_56336814_56337628
          Length = 815

 Score =  795 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgcaccccggcagggtacacagagtcggtgacattcttgtgacactgagccactgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgcaccccggcagggtacacagagtcggtgacattcttgtgacactgagccactgcca 260

                                                                       
Query: 61  ggagagacatggagacagagccctggtcagcaccttgggtcacttggtgccaagcagcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggagagacatggagacagagccctggtcagcaccttgggtcacttggtgccaagcagcca 320

                                                                       
Query: 121 ggacatgaggcctggtatcaggccctcagagatggcatcccagtcactgtgtcccttgag 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacatgaggcctggtaccaggccctcagagatggcatcccagtcactgtgtcccttgag 380

                                                                       
Query: 181 cccatggctgccacagcctgctgtggtaccatgtggcacttcttaactatgctgcttaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccatggctgccacagcctgctgtggtaccatgtggcacttcttaactatgctgcttaca 440

                                                                       
Query: 241 gaagatgacccgtcttcaaggaaggcttgagcattgtctggggacatgtgtagctgtcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaagatgacccgtcttcaaggaaggcttgagcattgtctggggacatgtgtagctgtcac 500

                                                                       
Query: 301 aactgggggagctgctagcaggcagcaagcagaacaggaatgctgctctctgaatgtacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aactgggggagctgctagcaggcagcaagcagaacaggaatgctgctctctgaatgtacc 560

                                                                  
Query: 361 tctggagactgggtctgtgcaaaggccctggggtagaggacacagctccactgca 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctggagactgggtctgtgcaaaggccctggggtagaggacacagctccactgca 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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