BAC Information

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BAC

Clone NameMSMg01-411F01
Chromosome17 (Build37)
Map Location 16,498,844 - 16,499,280
singlet/doubletsinglet
Overlap geneLOC100041383
Upstream geneDll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-411F01.T7 (MSMg01no411_f01.b1)MSMg01-411F01.TJ (MSMg01no411_f01.g1)
ACCAG508356AG508357
length751733
length of high quality
(start - end)
584 (50 - 633)437 (58 - 494)
definitionCHROMAT_FILE: MSMg01no411_f01.b1 PHD_FILE: MSMg01no411_f01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:19 2005CHROMAT_FILE: MSMg01no411_f01.g1 PHD_FILE: MSMg01no411_f01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:28:19 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNNCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGCCCTATACGCCATTTTTTAATGGGGTTATTTG
GTTTTCTGGAGTCTAACTTGTAGAGTTCTTTGTATATATTGGATTCTTCT
ATCGGATTATAGCCTTCTATCAGATTTAGGGTTGGTAAAGATATTTTCCC
AATCTGTTGTTTGCCTTTTTGTCTTATTGACAGTGTCCTTTGCCTTACAG
AAGGTTTGCAATTTTATGATATCTCATTTTTCAATTCTTGATCTTACAGC
ACAAGCCGTTGGTGTTCTCTGTTCAGGAATTGTTCCCCTGTGCCCATATC
TTAAAGGCTTTTCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTT
TTATGTGGATTCCTTGATCCACTTAGTCTTGAACTTTGTATGAGGAGATA
AGAATGGATCAATTCGAATTCTTCTACATGATAACCGCCAGTTGATCCAG
CACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCC
CTTTTCAAAGATCAAGTAACCAGGTGTGTGAGTTCATTTCTGGGTCTTCA
ATTCTATTCCATTGATCTGCCTGTCTGTTGCTGTACCAGTACCATGCGGT
TTTTATCACAATTGCTCTGTACTACAGCTTTAAGTCAAGGATGGTAATTC
TAACCGAGGCTCTATTATTGGTGAAAAAAGTTTTTGGTACCCCTAGGTTT
T
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTGGAACATTTTGGACTCCTTTTATTTGCAAGAAAGTACTAGC
AGTGACAGACAATGATGTAGAGAAATCCATTTGGACAAGTAACTGGCAAT
ATCTGGTATTGCTGACTACAGATCAGTCTCTGAGACTCAATAATATACAT
TTCCCATAAAGATGTAGGTCATAGATGAAAGACAACATCAGCTTGTGAGA
CTCAACAATATGTACTGATATAAAGACACAAGTCATAGATGAAGAACATT
CATGAGAAAAAGTAGCAGCAGGTCCATATCAAATTAGACTTGATTAGGCA
CTGTCTCTGAGGGCCACCCTTTGGGTTCCTCCTCACCACAGTGAGGACAC
TGAACCTCCTCAGACTGTACTGTCTGGTTTCATTCCCATCATCACCACAG
CCAACACACTTTGCTCTAGCAACACTGATCTCATTGCTCACCTTANAGTA
ATCCACAGTAGATATTCTAAACTTGTTTTCTTCTTCTGAGGACAAACTAC
TTCCTTACTAAATGACAAGTAAATATTTGTTCAATAATTAATATATTTTC
TATATTTGCTCACCCTCCTCTTATCTCTGTTAGCATTTTTGAAGGATAAT
AATGAAGTCTAATCTTATTTTACATGNCATATATCACTGACAAAAATTCA
ATTGGTTCCTGTTGGCAATTATCCCTCAGNTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no411_f01.g1 MSMg01no411_f01.g1 CHROMAT_FILE:
MSMg01no411_f01.g1 PHD_FILE: MSMg01no411_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:28:19 2005
         (437 letters)



>mm_chr17_16498644_16499480
          Length = 837

 Score =  814 bits (421), Expect = 0.0
 Identities = 433/437 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggaacattttggactccttttatttgcaagaaagtactagcagtgacagacaatgatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 637 ttggaacattttggactccttttatttgcaagaaagtactagcagtgacagacaatgacg 578

                                                                       
Query: 61  tagagaaatccatttggacaagtaactggcaatatctggtattgctgactacagatcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tagagaaatccatttggacaagtaactggcaatatctggtattgctgactacagatcagt 518

                                                                       
Query: 121 ctctgagactcaataatatacatttcccataaagatgtaggtcatagatgaaagacaaca 180
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctctgagacccaataatatacatttcccataaagatgtaggtcatagatgaaagacaaca 458

                                                                       
Query: 181 tcagcttgtgagactcaacaatatgtactgatataaagacacaagtcatagatgaagaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tcagcttgtgagactcaacaatatgtactgatataaagacacaagtcatagatgaagaac 398

                                                                       
Query: 241 attcatgagaaaaagtagcagcaggtccatatcaaattagacttgattaggcactgtctc 300
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 397 attcatgagaaaaagtagcagcaggtccatatcaaattagactggattaggcactgtctc 338

                                                                       
Query: 301 tgagggccaccctttgggttcctcctcaccacagtgaggacactgaacctcctcagactg 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ggagggccaccctttgggttcctcctcaccacagtgaggacactgaacctcctcagactg 278

                                                                       
Query: 361 tactgtctggtttcattcccatcatcaccacagccaacacactttgctctagcaacactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tactgtctggtttcattcccatcatcaccacagccaacacactttgctctagcaacactg 218

                            
Query: 421 atctcattgctcacctt 437
           |||||||||||||||||
Sbjct: 217 atctcattgctcacctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)