BAC Information

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BAC

Clone NameMSMg01-412E24
Chromosome17 (Build37)
Map Location 69,441,683 - 69,620,749
singlet/doubletdoublet
Overlap geneEpb4.1l3
Upstream geneD930040M24Rik, EG622645
Downstream gene2410021H03Rik, Zfp161, C030034I22Rik, A930029G22Rik, A330050F15Rik, LOC100043623, LOC668720, LOC673535, LOC100043630
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-412E24.T7 (MSMg01no412_e24.b1)MSMg01-412E24.TJ (MSMg01no412_e24.g1)
ACCAG509115AG509116
length744743
length of high quality
(start - end)
521 (52 - 572)476 (81 - 556)
definitionCHROMAT_FILE: MSMg01no412_e24.b1 PHD_FILE: MSMg01no412_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:38 2005CHROMAT_FILE: MSMg01no412_e24.g1 PHD_FILE: MSMg01no412_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:29:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,620,275 - 69,620,749)(69,441,683 - 69,442,159)
sequence
NNCAGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTTCCTGTGCGTGACTTGTGTGATAGCCAAGGGCTCGA
AAATGTGTTAAGTATTACTTTAATAAGTATTAGATGGCCACCGGGGATTT
AAAAATATATCTGTATCCAGCCAATAAGCTAATTCAATTACCCATGAATC
TTCGTCCTCATCTGTCATGGCTGCTAGTATACACAGACTCCTATCTGAGA
CAGGAGAATCACTGTCTACCTCTCTTTCCTCCCCGCCTGGTCCACTTTTG
TCTTTAAGGTACTGTCAGTTAGATAACAGTTTCTCAAAATGTAATCCCAA
GACCAAGAGTCCAGACATTGGGAACCAGTTAGAACTACAAATCTCCATCT
TGCCTCAGCCCTTTAGAACCAGAAGCAGGAAGGGAGGGTCATTCAGATCA
CTCTGATGGAAGTGGGGGTTTGAGGCCCACTGGCTTAGATGAGAACAAAC
AAACTGAAAACTAAAAGCGCAGTTAAGAGCATTGGCTGCTCTTCCTGAGG
TCCTGAGTTAATTCCCAGCACCCATATGGTGGCTCACAACCATCTGTAAT
GGGATCTGACACCCTCTTCTGGTGTGTCTGAAGACAGAGTACTCCTATAC
TTAAATAAATATTTCTTTTAAAAAAAATGGTAACAACAACAACCACAAAA
TCTGGTTTCTGGCCAAAGCCAGAATTCCTTTTCTGTGGGAGGCG
NNNNCCCGATGAAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGCAAGGCCTTCTTGCAT
CTCCAACCCAGAATCCTTAGCACCTTGCCCTGCTAGGAGAAACAGGGACC
ATGCTGTGTGATGTGCTTTCTGCTCACTCTTTTCTTCCAAAGCTACTAGG
ATTCAGTCATAGGAAGGCACATGAGTCCTATGACCTTCTTTAATGCCCCC
AAAACCATAAACACCAGAGCCTCAGTAGATCTTTCTGCTTTCAACCCCCA
CCATAGGGCTTCAGCTCCAACACTGATGTCCCTGGAACATACTTAAGGCA
AGGGAAAACCACAGCAGTGTCTGCCCCACACGAAACCCCCCCCCCCCCCG
TCTGTGGGGAAGTGAGACAAGGACATGGCCAAGTCCAGCTTTTATTTCTG
TCACTTGTGTCCCTTAGGGGACTTCTGGGCCTCGTTTCCATGAAAAACTC
AGAATTTATTTTTCTCCTTTCTCACTCATGGAAGTGAGATGTGGGCAGCA
GGGGCTTGCTCAAGGTCATCTGGTTTGTAACTGGACCCCTGGGGCCAGAC
TTCTTCACCCTGAGGGCTTTCTTGTGCAAGTTAGCTCCTCCCCAAAGGCA
GCCTTGTTGTTGATAAGGTTCTTTTGAGGGCGGAAATTTGGATTTTGAGC
TTTTCTCTTTTGTGCTAGTTGTCAGTTTATAACCCCAACCAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no412_e24.b1 MSMg01no412_e24.b1 CHROMAT_FILE:
MSMg01no412_e24.b1 PHD_FILE: MSMg01no412_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
         (521 letters)



>mm_chr17_69620275_69621195
          Length = 921

 Score =  880 bits (455), Expect = 0.0
 Identities = 470/475 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcatttcctgtgcgtgacttgtgtgatagccaagggctcgaaaatgtgttaagta 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ggaattcatttcctgggagtgacttgtgtgatagccaagggctcgaaaatgtgttaagta 416

                                                                       
Query: 64  ttactttaataagtattagatggccaccggggatttaaaaatatatctgtatccagccaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttactttaataagtattagatggccaccggggatttaaaaatatatctgtatccagccaa 356

                                                                       
Query: 124 taagctaattcaattacccatgaatcttcgtcctcatctgtcatggctgctagtatacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 taagctaattcaattacccatgaatcttcgtcctcatctgtcatggctgctagtatacac 296

                                                                       
Query: 184 agactcctatctgagacaggagaatcactgtctacctctctttcctccccgcctggtcca 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 agactcctatctgagacaggagaatcactgtctacctctctttcctccccgcctggtcca 236

                                                                       
Query: 244 cttttgtctttaaggtactgtcagttagataacagtttctcaaaatgtaatcccaagacc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cttttgtctttaaggtactgtcagttagataacagtttctcaaaatgtaatcccaagacc 176

                                                                       
Query: 304 aagagtccagacattgggaaccagttagaactacaaatctccatcttgcctcagcccttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 aagagtccagacattgggaaccagttagaactacaaatctccatcttgcctcagcccttt 116

                                                                       
Query: 364 agaaccagaagcaggaagggagggtcattcagatcactctgatggaagtgggggtttgag 423
           ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 agagccagaagcaggaagagagggtcattcagatcactctgatggaagtgggggtttgag 56

                                                                  
Query: 424 gcccactggcttagatgagaacaaacaaactgaaaactaaaagcgcagttaagag 478
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 55  gcccactggcttagatgagaacaaacaaactgaaaactaaaagtgcagttaagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no412_e24.g1 MSMg01no412_e24.g1 CHROMAT_FILE:
MSMg01no412_e24.g1 PHD_FILE: MSMg01no412_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:38 2005
         (476 letters)



>mm_chr17_69441483_69442359
          Length = 877

 Score =  907 bits (469), Expect = 0.0
 Identities = 475/477 (99%), Gaps = 1/477 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagcaaggccttcttgcatctccaacccagaatccttagcaccttgccctgctaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagcaaggccttcttgcatctccaacccagaatccttagcaccttgccctgctaggaga 260

                                                                       
Query: 61  aacagggaccatgctgtgtgatgtgctttctgctcactcttttcttccaaagctactagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagggaccatgctgtgtgatgtgctttctgctcactcttttcttccaaagctactagg 320

                                                                       
Query: 121 attcagtcataggaaggcacatgagtcctatgaccttctttaatgcccccaaaaccataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcagtcataggaaggcacatgagtcctatgaccttctttaatgcccccaaaaccataa 380

                                                                       
Query: 181 acaccagagcctcagtagatctttctgctttcaacccccaccatagggcttcagctccaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaccagagcctcagtagatctttctgctttcaacccccaccatagggcttcagctccaa 440

                                                                       
Query: 241 cactgatgtccctggaacatacttaaggcaagggaaaaccacagcagtgtctgccccaca 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cactgaggtccctggaacatacttaaggcaagggaaaaccacagcagtgtctgccccaca 500

                                                                       
Query: 301 cgaaacccccccccccccc-gtctgtggggaagtgagacaaggacatggccaagtccagc 359
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cgaaacccccccccccccccgtctgtggggaagtgagacaaggacatggccaagtccagc 560

                                                                       
Query: 360 ttttatttctgtcacttgtgtcccttaggggacttctgggcctcgtttccatgaaaaact 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttatttctgtcacttgtgtcccttaggggacttctgggcctcgtttccatgaaaaact 620

                                                                    
Query: 420 cagaatttatttttctcctttctcactcatggaagtgagatgtgggcagcaggggct 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagaatttatttttctcctttctcactcatggaagtgagatgtgggcagcaggggct 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space:   404022
Effective search space used:   404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)