BAC Information

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BAC

Clone NameMSMg01-413A24
Chromosome17 (Build37)
Map Location 38,411,114 - 38,411,661
singlet/doubletsinglet
Overlap genenone
Upstream geneH2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135
Downstream geneOlfr138, Olfr137, Olfr762-ps1, Olfr136, LOC626985, LOC100043297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-413A24.T7 (MSMg01no413_a24.b1)MSMg01-413A24.TJ (MSMg01no413_a24.g1)
ACCAG509684AG509685
length731765
length of high quality
(start - end)		509 (39 - 547)426 (69 - 494)
definitionCHROMAT_FILE: MSMg01no413_a24.b1 PHD_FILE: MSMg01no413_a24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:38 2005CHROMAT_FILE: MSMg01no413_a24.g1 PHD_FILE: MSMg01no413_a24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:30:38 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
GAATATTCTTCTGTAGCAGTGGCTTCATGATCAGATATTTATTTAGTGTT
TATCATGGATTTTTTTTGTACTTTACTTATGGAAAATAATTATCTAGTCT
GGACACAGTAATGTAATATGGCAAAATTTTTTGTTAAGGAATTGAAGTAC
AGAATGCCATACTCTTGGCATTTAGGGTTTTTATTAAAGGTAGGGTTTGA
CTTTTAATTTTTCTTATTATTTATTTATGCCTATATGTGCTTGTGGGTGT
GTGTCCATACAAGGACAGAAATGGGCATTTTATTCTCTGGAGCTGTAGAT
GAGGGTACTTGTGCTACACTCATCATGGTACTGGGAATACATACTTGGTT
TCCAAGAAAAACAATAAGTACTTTTAAGCACTGTGTAAGCTCTCCAGATC
CCAACAACAACCAACTGCTGTTATTTTATGGATTTATCTTTGTATGTGAC
TTGCACTTCTCTTGGNTTTCCATATTTTTTCTTTATTTTATTTATCTATT
GGTTATGNTAACATGGCACTTCTAAACTGTAGATAAAATAAATCAAGAGA
ATGGCTGTAACCCATGAAAGCCCCCAAAAGAATTCATCCTACTGGGCTTT
GCTAAACATCCCTTGGCTGGAACTCCCTCTCCTTGTTAATCTTCCGAAAA
AAAATCCCAAGGTTTTTAAGGGGAAAACCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAACCAGTCT
GGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAAGATCCAGTAATA
CCTCTTCTGGGCATATACCCAGAAGATGCCCCAACCGGTAAGCAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGATTCTGGA
AAGAACCCAGATGCCCCTCAACCGAGGAATGGATATAGAAAACGTGGTAC
ATTTCCACNATGGATTACTACTCAGCTATTAAAAAAAAGGAATTTATGGA
ATTCCCTGGGATGGCCCTGGAGGGCATCCTCCCTGAGTGGGGGATACCCC
CACCCCAAGGGATCCCAAAAAAATGGTCTCCCTGGAGAAGGGGAATTTAA
CCCCCGAAATTTTTGATTCCCCCCAAATTAAAATAAAATTTTTTTTATCC
CTGTATATTTCCAAAAAAAAAAACAAAACAAGGGGGGGGCCCCTCTTCTC
CTTCCTCTAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no413_a24.b1 MSMg01no413_a24.b1 CHROMAT_FILE:
MSMg01no413_a24.b1 PHD_FILE: MSMg01no413_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:30:38 2005
         (509 letters)



>mm_chr17_38410910_38411819
          Length = 910

 Score =  536 bits (277), Expect = e-156
 Identities = 463/552 (83%), Gaps = 51/552 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttg-aatattcttctgtagcagtggcttcatgatcagatatttatttagtgttt 63
           ||||||||| || | |||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 205 gaattcttgaaagaatcttctgtagcagtggcttcatgatcagatatatctttagtgttt 264

                                                                       
Query: 64  atcatggattttttttgtactttacttatggaa-aataatta-tctagtctggacacagt 121
           || ||||||||||||||||||||||||||| || ||||| || | || | |||||| |||
Sbjct: 265 attatggattttttttgtactttacttatg-aagaataactagt-tattgtggacagagt 322

                                                                       
Query: 122 aatgtaatatggcaa-aattttttgttaaggaattgaagtacagaatgccatactcttgg 180
           |||||||||||| || ||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 323 aatgtaatatgg-aagaattttttgttaagggattgaagtacagcatgccatactcttgg 381

                                                                       
Query: 181 catttagggtttttattaaaggtagggtttgacttttaatttttcttattatt-tattta 239
           ||| |||||||||| ||| |||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 382 catctagggtttttcttagaggtagagtttgacttttaatttttcttattattatattta 441

                                                                       
Query: 240 tgcctatatgtgcttgtgggtgtgtgtccatacaaggacagaaatgggcattttattctc 299
           ||||||| |||||||||||| ||||||||| |||| || |||| ||||||||||||| ||
Sbjct: 442 tgcctatgtgtgcttgtgggggtgtgtccacacaaagatagaattgggcattttattttc 501

                                                                       
Query: 300 tggagctgtagatgag-ggtacttgtgctacactcatcatggtactgggaatacatactt 358
           |||||||| |||| |  |||||||||| |||||||||||||||||||| ||||||| |||
Sbjct: 502 tggagctggagat-attggtacttgtgttacactcatcatggtactggaaatacatgctt 560

                                                                       
Query: 359 ggtttccaagaaaaacaataagtacttttaagcactgtgtaagctctccagatcccaaca 418
            ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 561 agtttccaagaaaaacaataagtactcttaagcactgtgtaatctctccagatcccaaca 620

                                                                       
Query: 419 acaac-----------------------------------------caactgctgttatt 437
           |||||                                         ||||| ||||| ||
Sbjct: 621 acaacaacaacaacaacaacaacaacaacaacaacaacaacaaaaacaactactgttgtt 680

                                                                       
Query: 438 ttatggatttatctttgtatgtgacttgcacttctcttggntttccatattttttcttta 497
           |||||||||||||||||||||||||||| ||||||||||| |||| ||| ||||||||| 
Sbjct: 681 ttatggatttatctttgtatgtgacttgtacttctcttggttttcaataatttttctttg 740

                       
Query: 498 ttttatttatct 509
           |||||| |||||
Sbjct: 741 ttttatgtatct 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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