Query= MSMg01no413_h12.b1 MSMg01no413_h12.b1 CHROMAT_FILE:
MSMg01no413_h12.b1 PHD_FILE: MSMg01no413_h12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:09 2005
(323 letters)
>mm_chr17_66595600_66596322
Length = 723
Score = 578 bits (299), Expect = e-169
Identities = 317/323 (98%)
Strand = Plus / Minus
Query: 1 tcaagagggctcacaataagactgtctttaactctgcctgaagcatacagatcttaacac 60
|||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct: 416 tcaagagggctcacaataaggctatctttaactctgcctgaagcgtacagatcttaacac 357
Query: 61 tgcccagtgctccggggtgaggtgggtcaccctgctccgtctctaaaatgactcagcaga 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 356 tgcccagtgctccggggtgaggtgggtcaccctgctccgtctccaaaatgactcagcaga 297
Query: 121 tggctgttgagtgtgacacactctctagatgtcaggcttcaaaacccaatcacccactct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tggctgttgagtgtgacacactctctagatgtcaggcttcaaaacccaatcacccactct 237
Query: 181 ggggacctttgcatgtttgatggctatttctttgtgacattttcaaatgcttactcggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 ggggacctttgcatgtttgatggctatttctttgtgacattttcaaatgcttactcggtg 177
Query: 241 ccaggctcctgatccagtgcctatgcagacttccttgtttaatcctcacattatttctgc 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 176 ccaggctcctgatccagtgcctatgcagacttccttgtttaatcctcaaattatttctgc 117
Query: 301 agaacgcgctattattatccctg 323
|||| ||||||||||||||||||
Sbjct: 116 agaaggcgctattattatccctg 94
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_h12.g1 MSMg01no413_h12.g1 CHROMAT_FILE:
MSMg01no413_h12.g1 PHD_FILE: MSMg01no413_h12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:09 2005
(555 letters)
>mm_chr17_66391545_66392499
Length = 955
Score = 1044 bits (540), Expect = 0.0
Identities = 552/556 (99%), Gaps = 2/556 (0%)
Strand = Plus / Plus
Query: 1 ataatggttcatttaatttagcaaacatatgtataaactggtttcaaaataagttcctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatggttcatttaatttagcaaacatatgtataaactggtttcaaaataagttcctta 260
Query: 61 taatatagtacccaaataaacatgacagaacccacgggctgaacaggaacacctgatgat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatatagtacccaaataaacatgacagaacccacgggctgaacaggaacacctgatgat 320
Query: 121 ctaattacctgagtatgtcctgtaagaagatataagtctctccccccaattttcacttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaattacctgagtatgtcctgtaagaagatataagtctctccccccaattttcacttgt 380
Query: 181 atgtcctgggtctgaatctacagaatgaaaagagacaggagaaaaggaaaaagcaaacgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtcctgggtctgaatctacagaatgaaaagagacaggagaaaaggaaaaagcaaacgg 440
Query: 241 agggaatatt-atagttcaacatagcaacatctctgatagaccaccagttagtcaggcat 299
|||||| || | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggaa-atgcagagttcaacatagcaacatctctgatagaccaccagttagtcaggcat 499
Query: 300 tggtatgtctctggctttacttcaaaaacactatttgggaaaaataaaagacatttaaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tggtatgtctctggctttacttcaaaaacactatttgggaaaaataaaagacatttaaaa 559
Query: 360 tacaggtctggccaatatataatatttcaatttcctgagtaccttgaagcttagaaatgc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tacaggtctggccaatatataatatttcaatttcctgagtaccttgaagcttagaaatgc 619
Query: 420 agccatatagtttctattacaccatgatattgcttattattatagttctttaaatgccat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agccatatagtttctattacaccatgatattgcttattattatagttctttaaatgccat 679
Query: 480 ttttaagtctgtcaataatgttaagagactgtgttcttattagaatttgccctgccaagg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttttaagtctgtcaataatgttaagagactgtgttcttattagaatttgccctgccaagg 739
Query: 540 gcaacttttatttgtc 555
||||||||||||||||
Sbjct: 740 gcaacttttatttgtc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
