Query= MSMg01no413_p02.b1 MSMg01no413_p02.b1 CHROMAT_FILE:
MSMg01no413_p02.b1 PHD_FILE: MSMg01no413_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
(526 letters)
>mm_chr17_43312921_43313846
Length = 926
Score = 600 bits (310), Expect = e-175
Identities = 382/424 (90%), Gaps = 33/424 (7%)
Strand = Plus / Minus
Query: 1 atggtataaagcacccctcccccaacactgcctcatgagctcacagtggcagcccaagac 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atggtataaagcatccctcccccaacactgcctcatgagctcacagtggcagcccaagac 362
Query: 61 caagtcaggatccctgcttagagaggcatggggctcccaagtctccagctctagctaagg 120
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 361 caagtcaggattcctgcttagagaggcatggggctcccaagtctccagccctagctaagg 302
Query: 121 atctgttaacagtcaagggacttccagatcagggagaggccattttgcttaagagtggcc 180
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct: 301 atctgttaacagtcaagggacttccagatcagggagaggccactttgcttaagagtggtc 242
Query: 181 cctggcaaggcatccagactccaatggatgggtgtacatcaatat--atatatatca--- 235
|||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct: 241 cctggcaaggcatccagactccaatgaatgggtgtacatcaatatgtatatatat-atat 183
Query: 236 --------------------atatatatatatatacat----gtatacatgtatattatg 271
|||||||||||||||||| ||||||||||||||||||
Sbjct: 182 atatatatatatatatatatatatatatatatatacatacatgtatacatgtatattatg 123
Query: 272 taacagataatatatgtaacatataatataatata-tatataatgtgctgatatatcaga 330
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 122 taacagataatatatgtaacatataatataatataatatataatgtgctgatatatcaga 63
Query: 331 attaaatatatatgtgtatatatatctattaattaaatagtacacagaattggtaagggg 390
||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 62 attaaatatatatatgtatatat--ctattaattaaatagtacacaaaattggtaaggga 5
Query: 391 tgga 394
||||
Sbjct: 4 tgga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_p02.g1 MSMg01no413_p02.g1 CHROMAT_FILE:
MSMg01no413_p02.g1 PHD_FILE: MSMg01no413_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:47 2005
(391 letters)
>mm_chr17_43162429_43163218
Length = 790
Score = 663 bits (343), Expect = 0.0
Identities = 376/387 (97%), Gaps = 4/387 (1%)
Strand = Plus / Plus
Query: 1 catttagtgtattttgattccattgctcctgaagctcctcccagatcctccccaccgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttagtgtattttgattccattgctcctgaagctcctcccagatcctccccaccgctt 260
Query: 61 aacttacccaagtttctctccctctcgcgcctccttgcattgagcacagtttgtgttggc 120
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 261 aacttacccaagtttctctccctctcgcgcctccttgcattgagtatagtttgtgttggc 320
Query: 121 taactgcttttgggtatcaggccacaatcaataaggaaaaaaacaaaacaaaacaaacaa 180
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 taactgcttttgggtatcaggccacaatcaataaggaaaaaa-caaaacaaaacaaacaa 379
Query: 181 acaaacctgtttctcatactgaggacggaacctagggctttcacatactgagcaagtgct 240
||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct: 380 acaaacctgtttctcatactgaggatggaacctagggttttcacatattgagcaagtgct 439
Query: 241 ctaccactgatctgtactcagctctcagatcgctcctgaagcctgctggaggatggaagc 300
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 440 ctaccactgagctgtactcagctctcagatcgctccagaagcctgctggaggatggaagc 499
Query: 301 tggaggtcagctgctttcacagggtggagatcacagt-cctgggg-tagtggcggtgaag 358
||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||
Sbjct: 500 tggaggtcagctgctttcacagggtggagatcacagtgcc-ggggatagtggcggtgaag 558
Query: 359 atgaattttctagaatttactggtggt 385
|||||||||||||||||||||||||||
Sbjct: 559 atgaattttctagaatttactggtggt 585
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 790
Length adjustment: 9
Effective length of query: 382
Effective length of database: 781
Effective search space: 298342
Effective search space used: 298342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
