Query= MSMg01no415_k18.b1 MSMg01no415_k18.b1 CHROMAT_FILE:
MSMg01no415_k18.b1 PHD_FILE: MSMg01no415_k18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:07 2005
(485 letters)
>mm_chr17_60099195_60100078
Length = 884
Score = 868 bits (449), Expect = 0.0
Identities = 476/485 (98%), Gaps = 1/485 (0%)
Strand = Plus / Plus
Query: 1 atttctgttcatacatttgaaaatggtgtcattgaccttagctgaatgatgccattgcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttctgttcatacatttgaaaatggtgtcattgaccttagctgaatgatgccattgcat 260
Query: 61 tattttgtccccttaccttgacagcccaactttcacatcatcagctcttttgctgaggct 120
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tattttgtccccttacattgacagcccaactttcacaccatcagctcttttgctgaggct 320
Query: 121 tccctcccactggtcttttttcatcaattattatcctattttcagttttcttctatgtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tccctcccactggtcttttttcatcaattattatcctattttcagttttctcctatgtgt 380
Query: 181 ctatgctttttttttaagttttatttttatatcacgaattaaattctttgctttattcta 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctatgctttttttt-aagttttatttttatatcacgaattaaattctttgctttattcta 439
Query: 241 gtctctgtgtttccttggaaaatagtgtcctctttcacttgtttcacgatacttataata 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 440 gtctctgtgtttccttggaaaatagtgtcctctttcacttatttcacgatacttataata 499
Query: 301 atcactcttttgaatttttcatttggacttttacctaagtcatttttattgtaatgggtt 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 atcactcttttgaatttttcatttggaaatttacctaagtcatttttattgtaatgggtt 559
Query: 361 ggtaatttttcttggttttgcatgttgcatgaagtttgtgctgtaatctacacattttgg 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 560 ggtaatttttcttggttttgcatgttgcatgtagtttgtgctgtaatctacacattttgg 619
Query: 421 tcagctcattggctaaagtttgttatctttgtctttttaattgggattatctttcttttt 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 620 tcagctcattggctaaagtttgttatatttgtctttttaattgggattatctttcttttt 679
Query: 481 attgg 485
|||||
Sbjct: 680 attgg 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 884
Length adjustment: 10
Effective length of query: 475
Effective length of database: 874
Effective search space: 415150
Effective search space used: 415150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no415_k18.g1 MSMg01no415_k18.g1 CHROMAT_FILE:
MSMg01no415_k18.g1 PHD_FILE: MSMg01no415_k18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:07 2005
(471 letters)
>mm_chr17_60286974_60287843
Length = 870
Score = 826 bits (427), Expect = 0.0
Identities = 460/471 (97%), Gaps = 1/471 (0%)
Strand = Plus / Minus
Query: 1 attcacaagatcaaaaactctaagacctcaacaacctgaaaacatgcttacactcaaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 attcacaagatcaaaaactctaagacctcaacaacctgaaaacatgcttacactcaaata 611
Query: 61 caaagcatgtggatttgccatcactcttctcctggttatttgtttttttctttcaatacc 120
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 610 caaagcatgtggatttgccatcactcttctcctggttattt-attttatctttcaatacc 552
Query: 121 agtatgtatcttctgcatgacttatgatatagacacttcagatatacaaggatataaatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 551 agtatgtatcttctgcatgacttatgatatagacacttcagatatacaaggatatgaatg 492
Query: 181 aacaaaatatttaaaattgtacttagataattcatttttcttaggcaaagaagcattatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aacaaaatatttaaaattgtacttagataattcatttttcttaggcaaagaagcattatg 432
Query: 241 ttattcatattaagcttaacggggttgtataaaaccagtaccaaagacacaaagaaaatc 300
|||| || |||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 431 ttatccagattaagcttaacggggttttataaaaccagtaccaaagacacaaaggaaatc 372
Query: 301 taagaggtacaatataaaataagtttatgtttcagataaaccagaaagcacaattctatt 360
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 371 caagaggtacaatataaaataagtttgtgtttcagataaaccagaaagcacaattctatt 312
Query: 361 attctactgttctgccaccttatttataattattgtacatataattatatgtacatgtgt 420
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 311 attctactgttctgccaccttatttataattattgtacctataattatatgtacatgtgt 252
Query: 421 ttgtttctagtatctccttgtatgtggacatatattctcacaggcacagag 471
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttgtttctagtatctccttgtatgtggacatatattctcacaggcacagag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 870
Length adjustment: 10
Effective length of query: 461
Effective length of database: 860
Effective search space: 396460
Effective search space used: 396460
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
