Query= MSMg01no415_m09.b1 MSMg01no415_m09.b1 CHROMAT_FILE:
MSMg01no415_m09.b1 PHD_FILE: MSMg01no415_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:14 2005
(234 letters)
>mm_chr17_59295181_59295814
Length = 634
Score = 426 bits (220), Expect = e-124
Identities = 229/232 (98%)
Strand = Plus / Plus
Query: 1 ctcttggacttgttaaaaaatgatttttacatagctaagaagttgatttatttttgttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttggacttgttaaaaaatgatttttacatagctaagaagttgatttatttttgttac 260
Query: 61 cctcaaccactttttcaaaatgaaatgaaaatgaagtgttttgtgaaattcacatagtac 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 cctcaaccactttttcaaaatgaaatgaaaatgaagtgttttgtgagattcacatagtac 320
Query: 121 atcaattctattttttgacaacttaatttctctggttacttgaatatcatgatagagtga 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 atcaattctattttttgacaacttaatttctctggttacttgaatatcttgatagagtga 380
Query: 181 tcctatattgccgtagtttcagaaaggtaagtgtctctgtttaagaaataaa 232
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcctatattgctgtagtttcagaaaggtaagtgtctctgtttaagaaataaa 432
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space: 140625
Effective search space used: 140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no415_m09.g1 MSMg01no415_m09.g1 CHROMAT_FILE:
MSMg01no415_m09.g1 PHD_FILE: MSMg01no415_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:14 2005
(489 letters)
>mm_chr17_59466846_59467734
Length = 889
Score = 907 bits (469), Expect = 0.0
Identities = 484/493 (98%), Gaps = 8/493 (1%)
Strand = Plus / Minus
Query: 1 tttaggtcatttgtgtatgcacaccaaagacagtgaatgaaatggccaaggtttaacagg 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tttagctcatttgtgtatgcacaccaaagacagtgaatgaaatggccaaggtttaacagg 630
Query: 61 aatcaattgcttttcatctactccttacaatggtactgtgagctataaatactcctcatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aatcaattgcttttcatctactccttacaatggtactgtgagctataaatactcctcatg 570
Query: 121 catttttcttttgttttctttctctcttgttttgctgcaaataagtaacacaaattttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 catttttcttttgttttctttctctcttgttttgctgcaaataagtaacacaaattttga 510
Query: 181 aatagccacttacacacatgcacacaccacacaaatactgaaagagaccaagcagagc-- 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatagccacttacacacatgcacacaccacacaaatactgaaagagaccaagcagagcag 450
Query: 239 --attttgggaatgaaacgggtgcctaaaatctataattcagaacggaagtttttcccct 296
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 caa----gggaatgaaacgggtgcctaaaatctataattcagaacggaagtttttcccct 394
Query: 297 tggataattagaaacagaatctatttgtgcaccttgtttttttcaatccccaatgtgttc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 tggataattagaaacagaatctatttgtgcaccttgtttttttcaatccccaatgtgttc 334
Query: 357 gactaaaatggtaattagccgtgtttccattttgtttgagacatactttatatcatgtgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gactaaaatggtaattagccgtgtttccattttgtttgagacatactttatatcatgtgt 274
Query: 417 agtgcagtcccagtctcatggggaaaatgaataatcaggagaatatttttcaatgtctct 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agtgcagtcccagtctcatggggaaaatgaataatcaggagaatatttttcaatgtctct 214
Query: 477 tctctgtaaagat 489
|||||||||||||
Sbjct: 213 tctctgtaaagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space: 421041
Effective search space used: 421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
