BAC Information

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BAC

Clone NameMSMg01-415N12
Chromosome17 (Build37)
Map Location 88,596,759 - 88,596,887
singlet/doubletsinglet
Overlap genenone
Upstream geneMcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11, EG225058
Downstream geneFoxn2, Ccdc128, LOC668866, Gtf2a1lf, Lhcgr, LOC668867, Fshr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-415N12.T7 (MSMg01no415_n12.b1)MSMg01-415N12.TJ (MSMg01no415_n12.g1)
ACCAG511805AG511806
length756734
length of high quality
(start - end)
239 (67 - 305)241 (64 - 304)
definitionCHROMAT_FILE: MSMg01no415_n12.b1 PHD_FILE: MSMg01no415_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:20 2005CHROMAT_FILE: MSMg01no415_n12.g1 PHD_FILE: MSMg01no415_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:34:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTTGCGGCGCTAAACGAATCACAATTCAAAGAGGAGCGCGGAATTCTTT
GTTTCCTTCTGCGCTCCATTTTTTAATAGGGTTCTTTGGTTCTCTGGAGT
CTAACTTCTTGAGTTCTTTGTATATATTGGACATTAGCCCTCTATCAGAT
TCAGGATTGGTAAAGATCTTTTCCCAATCTGGTAGTTGCCTTTTTGTCTT
ATAGACAGTGTCCCTTGCCTTACAGAAGCTTTGCAATTTTATGAGGTCCC
GTTTGTTAATTCTTGATCTTACAGTACAAGTCACTGGTGTTCTGTTCAGG
AATTTTTTTTCTCTGCCCATATGTTCCAGGGTCTTCCCCACTTTCTCCTC
TATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGGTCCTTGATCCACTTAN
ACTTGAGCTTTGTATAAGGACATAATAAGGGATCAATTAGCATTCTTCTA
CATGTTAACTGCCAGTTGAACCACCACCATTTGTTGAAAATGATGTCTCT
TTCTCCCTGGACGGCTTTAGCTTTTTTTGTGACTGATTAAGCGACCCATA
GTTGTGCGTCTTCCCTTCCGGTCCCTCCCTTTTATTTTCTTTGCCCTTCT
GGCTGTCCCTGTTTTTTTTTACAGCGTCTCTTTACCTCTTTTGTTTCTCC
CTTTTCCCTCCCCTTCCCCTTTCTTTTTTTTCCCCCTTTTTTTCTCTTTT
TTTCTTCCCTCCCGTACCTTTCCTTTCTTCTCCTCTTTCTCTTTTCCTTT
CCTTTN
TGTGTGAGGCCTGGNGGCCGCCGGTCAAACAACTTTAGGTGAACTATAGA
TTGCACGCGGAATTCTCTTCCTAGGAGGTTTGAGCCATAAAGAGTTCTTC
TTGGACTAGAGGTCATTTTAGTTTTCCGTTGGTTTACTCATTGTCACTCC
CTTCTTTGTGTGTTGTTTCAGAAAAGGCCACAGTGGCCAGGTACTCTTAC
ACGCGTTCTCGCGACCGGCCAGGAAAGACGCAACATACTGTAATCTTCTG
CGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAAGAAAGCA
ATAGATAGATCTAGAAAGCAAGAGAAAGAACAAGAACAAGAAAGCAAGAG
GAAGAACAAGAGCAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCCTTT
TAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCA
GCCCATCGGCCCAGTTGTCATCACAAGAAAGGCAGAACACATGGCGGGAA
AACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTATAACACAGCTG
TCAGCGCCATCTTTGTAATGCCAAATGTGAGGGCGGCTCCCACATTTTCC
CCTTTTCTTTTATAAGAGCAACAGCCCTCCCTATTATTGATAGTGCATAC
ACCTGCCCATCTCTCCCTGTGCCCGCTCACTACCCCTTGTCTCTATTACT
CCTTTTTCCTATTCCTTTCTCTTCCATCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no415_n12.g1 MSMg01no415_n12.g1 CHROMAT_FILE:
MSMg01no415_n12.g1 PHD_FILE: MSMg01no415_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:34:20 2005
         (241 letters)



>mm_chr17_88596559_88597199
          Length = 641

 Score =  242 bits (125), Expect = 2e-68
 Identities = 128/129 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttcctaggaggtttgagccataaagagttcttcttggactagaggtcattttagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcttcctaggaggtttgagccataaagagttcttcttggactagaggtcattttagtt 260

                                                                       
Query: 61  ttccgttggtttactcattgtcactcccttctttgtgtgttgtttcagaaaaggccacag 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 ttccgttggtttactcattgtcactcccttctttgtgtgttgtttcagaaaaggtcacag 320

                    
Query: 121 tggccaggt 129
           |||||||||
Sbjct: 321 tggccaggt 329


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)