Query= MSMg01no416_h15.b1 MSMg01no416_h15.b1 CHROMAT_FILE:
MSMg01no416_h15.b1 PHD_FILE: MSMg01no416_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:06 2005
(612 letters)
>mm_chr17_60146731_60147742
Length = 1012
Score = 1079 bits (558), Expect = 0.0
Identities = 599/630 (95%), Gaps = 29/630 (4%)
Strand = Plus / Minus
Query: 5 gaattcttggactttccatcaggagacagcaattttagactttctggggccacagtctga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattcttggactttccatcaggagacagcaattttagactttctggggccacagtctga 698
Query: 65 aatccactttaataagtcatagatagatagatagatagataga----------------- 107
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aatccactttaataagtcatagatagatagatagatagatagatagatagatagatagat 638
Query: 108 ----c---agatatacatagaatattaaatatattgaaaaattaatatcatatatactat 160
| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 agatcgatagatatacatagaatattaaatatattgaaaaattaatatcatatatactat 578
Query: 161 ataaaatatgttgtatatatggacatacaaatatatgtaaacatgtatgttatatgtgga 220
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 577 ataaaatatgttgtatatatggacatacaaatatatgtaaacatgtatattatatgtgga 518
Query: 221 aattttattttattatttcagtttctgtaggaaactccatctaatgcaatgactattaat 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aattttattttattatttcagtttctgtaggaaactccatctaatgcaatgactattaat 458
Query: 281 ccttattaagagaggagatgatgattcagagcttttcttttttcgttttgttttgttttg 340
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 457 ccttattaagagaggagatgatgattcagagcttttcttttttc-----gttttgttttg 403
Query: 341 ttttgttttgttttgttttgttttgttttgttttgttttgtttttcgagacagggtttct 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttttgttttgttttgttttgttttgttttgttttgttttgtttttcgagacagggtttct 343
Query: 401 ttgtatagccctggctgtcctggaactaactctgtagaccagtctggcctcgaactcaga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttgtatagccctggctgtcctggaactaactctgtagaccagtctggcctcgaactcaga 283
Query: 461 aatccacctgcctctgcctcccaaatgctgggattaaaggcgtttgccaccatgtccagc 520
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 282 aatccacctgcctctgcctcccaaatgctgggattaaaggcgttagccaccatgtccagc 223
Query: 521 tcagagcctttcttgatgcttggatctttctagagcaaagatatacccaagtttttagtt 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tcagagcctttcttgatgcttggatctttctagagcaaagatatacccaagtttttagtt 163
Query: 581 gtttcaaaattagttttcatggatagaata 610
||||||||||||||||||||||||||||||
Sbjct: 162 gtttcaaaattagttttcatggatagaata 133
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no416_h15.g1 MSMg01no416_h15.g1 CHROMAT_FILE:
MSMg01no416_h15.g1 PHD_FILE: MSMg01no416_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:06 2005
(493 letters)
>mm_chr17_60119480_60120372
Length = 893
Score = 870 bits (450), Expect = 0.0
Identities = 482/493 (97%)
Strand = Plus / Plus
Query: 1 attgactatatataattatatttttcagctttgcattattaagtgacaaggatgaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgactatatataattatatttttcagctttgcattattaagtgacaaggatgaataca 260
Query: 61 attgtctccaaaatccctgtcacaaaccccaactttcctgcctttgtttatgcagagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attgtctccaaaatccctgtcacaaaccccaactttcctgcctttgtttatgcagagaaa 320
Query: 121 aataaaagtgattctcaatatgattttatctgaaaaaaagcacaagatatttatgagtta 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataaaagtgattctcaatataattttatctgaaaaaaagcacaagatatttatgagttg 380
Query: 181 tatgtatgatttatactcctggccatcatcctaaccaggagacactgattctctgcaatt 240
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 381 tatgtatgatttatactcctggccatcatcctaaccaggagtcaccgattctctgcaatt 440
Query: 241 tgctctaaggctgcagcagcagaaagaggagtctatcaaagaaatcatttatgcctcact 300
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgatctaaggctgcagcagcagaaagaggagtctatcaaagaaatcatttatgcctcact 500
Query: 301 cattgctaatgtcagcagaatggtcattttgcccatttcacagatgaggaaataagtgac 360
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 501 cattgctaaggtcagcagaatggtcattttgcccacttcacagatgaggaaataagcgac 560
Query: 361 aaatgaaattaattttctcaaccttgaatatcatggtcgaaatttttgtttctttaaaga 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgaaattaattttcttaaccttgaatatcatggtcgaaatttttgtttctttaaaga 620
Query: 421 atatccctttattaatcttaaggcaaaatttctcatctggnaatatttatgtctatgagc 480
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct: 621 atatccctttattaatcttaaggcaaaatttctcatctgggaatatttacgtctatgagc 680
Query: 481 ctaactctatgat 493
|||||||||||||
Sbjct: 681 ctaactctatgat 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
