XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACCTG
AGATTCGCTTCCCAATAAACCTGTCTTTAATATATTCTAATATGAATTGA
CTCATTTCACTGGCAGAGAACTATCTTATCAGTTGTATCAATACAAGATA
ACTTTTTTTATAAGGATTAACTAAATGAGGCAACAAAATTATTTGTGGGC
TCCTGTGCATGGAAAAGCACATGCAATGGCACCTGTAAAGATGAAAGGAC
AACCTCAGATGTCTTCCCTCACCTTTCATGGGGTCACTTGTTGCTACTGC
ATAAGCCCCAATACTGCTCCACTAGTCCCTGGCTAAATGTTTCCTCCTCT
CATGAGCAAGTCAAGTGACTGATATGATAGAACTACAGATGCATCCCACT
CAAATTCATATGTGTGCTGAGGGTATGAACTTATTCATCAGACACGACAA
GAGCTTTACAGCCGATTCCCTGCATAAAATGCATTTTGAGAAATAACAAC
TTTAACAAGGACAAATGGATCGCATTTCAATGGACTTTGCTTGAGTCAGA
ACATCCAGAGTTTGACTCACAGAGCTAGCTGTAAAGAAGAGAAGGGGCTT
TTTGATATGTGCATTGTAGGTTCAGGCAAAATGAATAAATGGTTTGTCTA
TGGTGAATGAGAACACCCTTACAGAAAGCATCCTCCCAGAGGCTTTCCTT
AAACTTATGGAAGCTCTCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTGTACTAAAATCATCTGGCCCTGGGCTTTAATTTTTGGTTGGGAG
ACTTTTAATTACTGTTTCCATTTCCCTGAGGTTATAGTGTGCTTAAATTG
CTTATCTCATCCTCTTTTAACTTTGGTCGGTTGTATATATTGAGGCAATT
ATCCATTCCCTTTAGATTTTCCAATTTTGCAGAGTACTGGCTTTTGAAGT
ATGTCCTTATGATTCTCTGGATTTCCTTTGTGTCTGTTGTTATACTTTTT
TGTTTTTAATTTCTTTAAGTTGGATCTTGTCCTTCTGTTTTTGAGTTAAT
TTGGCTAAGGGTTTATCAATTTCTTGATTTTTCTCAAAGAACTAATTCAC
TTTCATTGATTCTTATCACTGGTTTTCGTTTGTTTCTAGTTTATTGATTT
GAGTTCTGAGTTTGATGTTTTTTTGCCAACAACTTCTTTTTGCTTCATAT
CTATCAAATATACTTGTTAAGTTACTAGTATGAGATTCTCTCCATATATC
TATGTCTATGTTTATGTCTATGGCCATTGACTATTGCCTATACCCATTAT
TCATCTTATATCCATACCCATTATAAACTTTATCTAGATGCCCTATTTCT
TCTATCTAATTTAATCCAATCTTATCCAATCCAATCCTATTCGATCCCAT
GCCATTCTAATGAACCCCATTTTATTCCCAAG

Query= MSMg01no416_l09.b1 MSMg01no416_l09.b1 CHROMAT_FILE:
MSMg01no416_l09.b1 PHD_FILE: MSMg01no416_l09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:24 2005
         (572 letters)



>mm_chr17_42286471_42287442
          Length = 972

 Score = 1023 bits (529), Expect = 0.0
 Identities = 559/569 (98%), Gaps = 2/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctgagattc-gcttcccaataaacctgtctttaatatattctaatatgaatt 63
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctgagag-cagcttcccaataaacctgtctttaatatattctaatatgaatt 263

                                                                       
Query: 64  gactcatttcactggcagagaactatcttatcagttgtatcaatacaagataactttttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gactcatttcactggcagagaactatcttatcagttgtatcaatacaagataactttttt 323

                                                                       
Query: 124 tataaggattaactaaatgaggcaacaaaattatttgtgggctcctgtgcatggaaaagc 183
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 324 tataaggattaactaaatgaggcaacaaaattatttgtgtgctcctgtgcatggaaaagc 383

                                                                       
Query: 184 acatgcaatggcacctgtaaagatgaaaggacaacctcagatgtcttccctcacctttca 243
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 acatgcaatggcacctgtaaagatgagaggacaacctcagatgtcttccctcacctttca 443

                                                                       
Query: 244 tggggtcacttgttgctactgcataagccccaatactgctccactagtccctggctaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggggtcacttgttgctactgcataagccccaatactgctccactagtccctggctaaat 503

                                                                       
Query: 304 gtttcctcctctcatgagcaagtcaagtgactgatatgatagaactacagatgcatccca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttcctcctctcatgagcaagtcaagtgactgatatgatagaactacagatgcatccca 563

                                                                       
Query: 364 ctcaaattcatatgtgtgctgagggtatgaacttattcatcagacacgacaagagcttta 423
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 ctcaaattcatatgtgtgctgaggctatgaacttattcatcagacacgacaagagcttta 623

                                                                       
Query: 424 cagccgattccctgcataaaatgcattttgagaaataacaactttaacaaggacaaatgg 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaccgattccctgcataaaatgcattttgagaaataacaactttaacaaggacaaatgg 683

                                                                       
Query: 484 atcgcatttcaatggactttgcttgagtcagaacatccagagtttgactcacagagctag 543
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 atcgcatttcaatggactttgcttgagttagaacatccagagtttgactcacagagctag 743

                                        
Query: 544 ctgtaaagaagagaaggggctttttgata 572
           |||||| | ||||||||||||||||||||
Sbjct: 744 ctgtaagggagagaaggggctttttgata 772


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)