BAC Information

Click to search

BAC

Clone NameMSMg01-417A16
Chromosome17 (Build37)
Map Location 17,453,879 - 17,454,221
singlet/doubletsinglet
Overlap geneEG626854
Upstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238
Downstream geneLOC100041965, Riok2, Lix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417A16.T7 (MSMg01no417_a16.b1)MSMg01-417A16.TJ (MSMg01no417_a16.g1)
ACCAG512716AG512717
length737721
length of high quality
(start - end)		542 (48 - 589)414 (78 - 491)
definitionCHROMAT_FILE: MSMg01no417_a16.b1 PHD_FILE: MSMg01no417_a16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005CHROMAT_FILE: MSMg01no417_a16.g1 PHD_FILE: MSMg01no417_a16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:48 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTAATGTTCCATTAATTTGCATTTCCATTTTGGCTAAGGATGGA
GAACATTTCTCTACGTGTTTCTCAGCCATTTGAAGTTGTCTGTTGGGAAC
TGAATTCTTTGTTGAAATGTGTTGTGTATTACAACTCTATCATGTAGAGA
TTGGTAAAAAACTATCCTCACATTCCATACTTTGCCTCTTTCTTTTTCTA
ATTAACTTGGCTTTTGCCTTACAGAAACATCACTATTTCTTGAGTTCCAA
TTCTTTAATTGCTGATCTTAATGCCTTCGACATTAGTGTTTTTCAGAAGT
CTCTGCTGTGACAGTGCTGCCGGGGATGTTCTGCCCTTAGGGTTCACTCA
GGGTCACTGTGTCTGGCTTTAAGTCTTTTTTTTTTTTTTGGATGGACTCT
TTTTTTTTTTAAGATTTTATTTATTTATTTATTTTCAGACACTCCAGAAG
AGGGCATCCGATCTCATTACAGATGGTTGTGAGCCAGCATGTGGTTGCTG
GGATTTGAACTCAGCACCTTCGGAAGAGCAGTGGGGGCTCTTAACCACTG
AGCCATCTCGCCAGCCCTGGCTTTAAGTCTTTAATCCACTTGGAATTGAG
TTTTGGGCAGGGTAAAGTAATATAGATATACTTGCATTCTTTTGCCGGTA
AAGCTACCTTTTATAAAGCAAAATGAAGCTTACGTAG

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAATTAATTGTATGCCTTCATAAT
TTTCAATAAATTAATTCTAAGTTGGGAAAATTAACCAATCTTCTAATTGT
CCTGAGCGAGCTATACAGGTTTAGTTCTCCTTAGGCAGAGTATTGTATCA
TTTATGTTCAATGAAAAGATGATAGACAGACTAGAAAGACAGATACATAG
ACAGATAGACAGACAGAGATATATCTGTCACATATAATACAACTATGTAA
GGAAGAATAACAAAATATATATACCTTGTATTCACTTAGTTTTAATTTTT
GTTCCTCCTAGACATGTGGCACTTAGATTAAGTTTTCACAACAAACTTTT
TCACTTCCATGAACTTCCACACTCAATAATATAAGCAACCTTGCCACAAG
TATATGAGTAACATCAGTATACTATGGACTGTCTGCATATCAGATAGTTT
TTGGAAATAAACTGAATCCCCAATTCCAATTAATTTTTTTAAACAAACCG
GGGGGGGGGGGGGGGGAAAAAAAAAAAAAAGGGGGGGGTATAACACCCCC
CCCATAAAAAAAAAAAAGGGGGGGGGCGGTGCCCTTTCTCATTTAAAAAA
AAAACCCCCCCCCCCTCCTTTTTTTTTTTTCCCCCCCTTTTTCTTTTTTC
TCCTTTTTTCCCTTTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_a16.g1 MSMg01no417_a16.g1 CHROMAT_FILE:
MSMg01no417_a16.g1 PHD_FILE: MSMg01no417_a16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:48 2005
         (414 letters)



>mm_chr17_17453879_17454692
          Length = 814

 Score =  648 bits (335), Expect = 0.0
 Identities = 341/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattaattgtatgccttcataattttcaataaattaattctaagttgggaaaattaacca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 343 aattaattgtatgccttcataattttcaataaattaattctaaattgggaaaattaacca 284

                                                                       
Query: 61  atcttctaattgtcctgagcgagctatacaggtttagttctccttaggcagagtattgta 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 283 atcttctaattgtcctgagcgagctatacaggtttagctctccttaggcagagtattgta 224

                                                                       
Query: 121 tcatttatgttcaatgaaaagatgatagacagactagaaagacagatacatagacagata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcatttatgttcaatgaaaagatgatagacagactagaaagacagatacatagacagata 164

                                                                       
Query: 181 gacagacagagatatatctgtcacatataatacaactatgtaaggaagaataacaaaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 gacagacagagatatatctgtcacatataatacaactatgtaaggaagaataacaaaata 104

                                                                       
Query: 241 tatataccttgtattcacttagttttaatttttgttcctcctagacatgtggcacttaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 tatataccttgtattcacttagttttaatttttgttcctcctagacatgtggcacttaga 44

                                                      
Query: 301 ttaagttttcacaacaaactttttcacttccatgaacttccac 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 43  ttaagttttcacaacaaactttttcacttccatgaacttccac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |