BAC Information

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BAC

Clone NameMSMg01-417C06
Chromosome17 (Build37)
Map Location 25,763,931 - 25,764,178
singlet/doubletsinglet
Overlap geneTmem112
Upstream geneTsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l, Ift140, BC054438, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8
Downstream geneLOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-417C06.T7 (MSMg01no417_c06.b1)MSMg01-417C06.TJ (MSMg01no417_c06.g1)
ACCAG512792AG512793
length752778
length of high quality
(start - end)
248 (70 - 317)239 (77 - 315)
definitionCHROMAT_FILE: MSMg01no417_c06.b1 PHD_FILE: MSMg01no417_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:56 2005CHROMAT_FILE: MSMg01no417_c06.g1 PHD_FILE: MSMg01no417_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:35:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCACTGTTCCCATCATCCCTGGGGCATCCAGTCTGAGTGTGT
TTGTTTCCCAAGAGGTAACTTGGTTGTCTGAGTAACTCATCCTTCGAGTC
TTTAAATAGAGTGCTCCCAGGAGGCAGAGCACAGTTCAACTCCCTGCAGT
GCTCACAGCTCCCTTGTGGTGTCAGGATTGCTGGGAGCCCTGTGGGGCCC
GTGACACCCTGTAGATGTTGCTTCTGATAGAGCGTTCCCTCTAAAGCCAG
CCTTCACAAGCAGGTACCCATTATGTAGCGTCACTCATGTCACATGTGGT
CCTGGTGTGAGTACTCACTCGTTCCCATAGGCGCTGACCATGTTCATGTG
GTCCCAGCGCTCTCGAGATCACTTGGCCCTGTCTCTTGGGTGTTAGTGCC
CATTTTTGATCATTATTCTTATGATCTCATCTGCATCTGTCTATATCCCC
TTTCTGCTTTTCCTATCCACCTACCTTTTTATTCTGCTTCCTGCGTTCCT
TCCTCGTTCGTGTTTGAATTTAAACATGATCCTGCTTCCTTTCTCAGCAC
ATTTTGCCTCTTGTTCCTCCTTCCTGACTGTCTTTCTATTCCTCTTTTCT
TTCTTTTTTTTACCTCGTTTTCTTCCTCTTCCCCTTTTCATCCGTTTTCC
CCCCTCCTGTACTCCTTTTCTACCACTCAATACCCCTATTTTTCCTACTA
GN
TTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGACTCGAGAAATTCTCTCCATCAGATTGGCCTGT
GAGCATGTCTTTGAGGCATTTAGCTGACTCTGACACTTTAATCTATCTCT
CATCTTTCCATCCATCCATCCATCTATCATAGTAATGATCAAATAAAAAG
AGACATCTTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCTTTCCTTCCTTC
TTTTCTTTACTTCTTTCTTGTTTTTTTTCTTCTTGTTTTTAGATACAGTC
TTTCACTGTGTAGTCCTGGTCGTTCTGGAACTCAGTTCTGTAAACCAGGC
TGGCTTTGAACTCTCAGAGATCCACCTGCCTCTGCCTCTGCCTCCTGGGT
GCTGGAACTAAAGGTGCGCGCTGCTATCACCCGGTTGCAACTCATTTATT
AAGGTAAGGGCACAAAGTCTTGAGACATTCAAGGAAGTCCCCAAGCTTGA
GCATAAACAGTTAAAGGTTCTCTGATACGTGGGGTGTTCCCTCATTCATC
CTTTATTTTCCCCTCTGGTTATCTACCTACCCTCCCCATCATTTTCTGTT
GCACCCTTGTATCTCCCTCATGTTTTTTTCGGCATTCATACCCTTGGGTT
TTTACACTTTTTGCTTACCTCCTTGTTGTGTCTAGGGTTACCCTTTCCCC
CAGTTACCCTTGTTTATTATTTTCCCCCCTCTTTTTATCATTTTATTCCT
CCCTTATATTCACACCATTTGTTCTCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no417_c06.b1 MSMg01no417_c06.b1 CHROMAT_FILE:
MSMg01no417_c06.b1 PHD_FILE: MSMg01no417_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:35:56 2005
         (248 letters)



>mm_chr17_25763731_25764378
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcatccctggggcatccagtctgagtgtgtttgtttcccaagaggtaacttggttgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcatccctggggcatccagtctgagtgtgtttgtttcccaagaggtaacttggttgtct 260

                                                                       
Query: 61  gagtaactcatccttcgagtctttaaatagagtgctcccaggaggcagagcacagttcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtaactcatccttcgagtctttaaatagagtgctcccaggaggcagagcacagttcaa 320

                                                                       
Query: 121 ctccctgcagtgctcacagctcccttgtggtgtcaggattgctgggagccctgtggggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccctgcagtgctcacagctcccttgtggtgtcaggattgctgggagccctgtggggcc 380

                                                                       
Query: 181 cgtgacaccctgtagatgttgcttctgatagagcgttccctctaaagccagccttcacaa 240
           |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 381 cgtgacaccctggagatgttgcttctgagagagcgttccctctaaagccagccttcacaa 440

                   
Query: 241 gcaggtac 248
           ||||||||
Sbjct: 441 gcaggtac 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)