BAC Information

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BAC

Clone NameMSMg01-418G02
Chromosome17 (Build37)
Map Location 49,683,498 - 49,683,875
singlet/doubletsinglet
Overlap geneDaam2
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1
Downstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418G02.T7 (MSMg01no418_g02.b1)MSMg01-418G02.TJ (MSMg01no418_g02.g1)
ACCAG513731AG513732
length755892
length of high quality
(start - end)
448 (50 - 497)440 (172 - 611)
definitionCHROMAT_FILE: MSMg01no418_g02.b1 PHD_FILE: MSMg01no418_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:33 2005CHROMAT_FILE: MSMg01no418_g02.g1 PHD_FILE: MSMg01no418_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:37:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGTGTTTCCACTCAGCCTCCCAGACTTCCTTCCTCTTCCT
CATTCTTATCTCCCCTCCCTCCATGTCTCCTATCCCCATCATCCCAGTTT
TGCCTGCCTCCCATGAAGACTTCGATGATCCAGGCTTTTTGGCACATGCT
TGTAATCTTAACAGTTGGGGGTAGGGTGTAGAAGAAGTTATCACAAGTTC
AAAGGTAGCCTAGGCTACAATTGCCAGTTGAAGGATAGCTACAGTTGGCC
TACATGAGATGCTTTCTCAAACAAATCAAAACAACAAAAAGACAGATAAA
TTTTGGAGAAGTGGCCTGGGTTCAGAGTTCCTGCAGAGGGAAGACATGTT
CTCTACAACCCATAGCAAGGACAGAGAAAGAATACAGAAGTCCCCTGGGA
TACTGAGGCCACCCTTGAGACTTTCCATTAAGCAAGGTTTGCTGTGCACA
CCAAAGAGAATGACATTTGATTAGCAAAAGCAAGGTATAGTTGAGATTAT
ACAAGCTGATTGCAGGCCCTTGTTACAGGATCCAGCCATCTTAGGAGTGA
GAGGTGCATCTGTAGTCCGTGAGCCCTTGTTCCTCATGCGTCATGATAGC
TGCGTGACTTGGTTTAATCCTATTCCCCTTCCTCCAATGTCCCTCCTTGT
TCTTTCCATTGTCACCTTTTTCACTATTGCTTGTCTCCCTCCCTTACCTT
CAATN
GGAGGAGAGGAGGAGNAGGATGAAGGAGAGGAGAGGAGGGGAGGGGCNAG
CAGGNAGGAGGGAGGGAGCCGGAGGGNNNGNGGAGAGGGAGGGAACAAAG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAACATCACATAATCCCAGAAACTATCT
GCAGCTGGCAAAACCACACCCCACTCAGAGCAAGAGGCAAATCATTGTAG
GGATAGTTCTGATGTTAAGGTCCTGTTCCCCAACTGGTTCTTGATCTGTC
AGTAAAGAAGCCATGGGCCAATTGCTGGGCAGAAGGAATAGGCAGGACTT
CCAGGTTCCTGGAGGCAAGCAGACAGACACAAGGAGAGAAGAGTGAAAGA
GAGAATTTGCCATGCTTCTGAGGGAGAAAAGGTGACCAGTCACGAGAGAC
CTCAGACAAAGTGGCCACAGGCCACTCCTACAGGCAGGCAGTTGGGAGTG
TTTAGCTGGGACTAGATATAACTGAGCAATTAAAGTTGAGCTCAGGTGAA
GAGGCGCTCAGCTAAGAGTATTGATAAGGGCATGCTTCTCCAGGCAGGGG
ATAAGCACCACCCAGCAACTGGGCCAAAGAGGTCGAAATTGAACAATGTA
TGTCTTTATGGCTTCTATCTGCGAATTCAAACGAAACATGGAAAGAGGCA
TGAGAATGTGTCCCCAATCCCAACAGCATTAAGTGGGGGGAACCAAATAG
ATAAACTTCAACTAAAATAAAGGATCACATTGTCGAATATAAATAACTTG
GAAATGCACACATTCATAAACCCTCACCAGCAGGGAGAAAGCCTAGAACC
CAGAAACAAACTTCTTCCTCTACCAATATAACAGCCCCAGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_g02.b1 MSMg01no418_g02.b1 CHROMAT_FILE:
MSMg01no418_g02.b1 PHD_FILE: MSMg01no418_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:37:33 2005
         (448 letters)



>mm_chr17_49683022_49683875
          Length = 854

 Score =  669 bits (346), Expect = 0.0
 Identities = 368/378 (97%), Gaps = 6/378 (1%)
 Strand = Plus / Minus

                                                                       
Query: 77  tctcctatccccatcatcccagttttgcctgcctcccatgaagacttcgatgatccaggc 136
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 854 tctcctatccccatcatcccagttttgcctgcctcccaagaagacttcgatgatccaggc 795

                                                                       
Query: 137 tttttggcacatgcttgtaatcttaacagttgggggtagggtgtagaagaagttatcaca 196
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tttttggcgcatgcttgtaatcttaacagttgggggtagggtgtagaagaagttatcaca 735

                                                                       
Query: 197 agttcaaaggtagcctaggctacaattgccagttgaaggatagctacagttggcctacat 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 agttcaaaggtagcctaggctacaattgccagttgaaggatagctacagttggcctacat 675

                                                                       
Query: 257 gagatgctttctcaaacaaatcaaaacaacaaaaagacagataaattttggagaagtggc 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gagatgctttctcaaacaaatcaaaacaacaaaaagacagataaattttggagaagtggc 615

                                                                       
Query: 317 ctgggttcagagttcctgcagagggaagacatgttctctacaacccatagcaaggacaga 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ctgggttcagagttcctgcagagggaagacatgttctctacaacccatagcaaggacaga 555

                                                                       
Query: 377 gaaagaatacagaagtcccctgggatactgaggccacccttgagact-tt-----ccatt 430
           ||||||| |||||||||||||||||||||||| |||||||||||||| ||     |||||
Sbjct: 554 gaaagaagacagaagtcccctgggatactgagcccacccttgagactcttgaaatccatt 495

                             
Query: 431 aagcaaggtttgctgtgc 448
           ||||||||||||||||||
Sbjct: 494 aagcaaggtttgctgtgc 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 854
Length adjustment: 10
Effective length of query: 438
Effective length of database: 844
Effective search space:   369672
Effective search space used:   369672
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)