BAC Information

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BAC

Clone NameMSMg01-418P07
Chromosome17 (Build37)
Map Location 20,743,708 - 20,744,337
singlet/doubletsinglet
Overlap genenone
Upstream geneEG627576, EG224572, EG627618, EG627636, LOC100042273, LOC210465, LOC670534, EG627664, V2r7, LOC100041856, EG545190, Fpr-rs7, Fpr-rs6, EG627743, EG224576, V2r6, EG637720, EG665525, EG627805, V1re5, EG627814, EG381065, EG224582
Downstream geneFpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508, Zfp52, BC049807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-418P07.T7 (MSMg01no418_p07.b1)MSMg01-418P07.TJ (MSMg01no418_p07.g1)
ACCAG514170AG514171
length747751
length of high quality
(start - end)		582 (48 - 629)630 (76 - 705)
definitionCHROMAT_FILE: MSMg01no418_p07.b1 PHD_FILE: MSMg01no418_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:18 2005CHROMAT_FILE: MSMg01no418_p07.g1 PHD_FILE: MSMg01no418_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:38:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCCTTGGCATACCGAAAGGCTGAGAAACACCTGAAAAAAT
GTTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAGA
TTCCATCTCACACAAGTGAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGGAAATTGGACATAGTACTACCATAGGATCCAGCAATACCTCTCCTGGG
CATTTATCCAGAAGATGCCCCAACTGCTAATGGATGGATCACAGGGCTCC
CAATGGAGGAGCTAGAGAAAGAACCCAAGGAGCTAAAGGGATCTGCAACC
CTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGAC
TCTAGCTGCATATGTAACAAAAGATGGCCTAATCGGCCATCACTGGAAAG
AGAGGCCCATTGGACACGTAAACTTTGTATGCCCCAGTACAGGGGAACGC
CAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGTTTTTTTTCTTTC
CTCTTTTTCTTTTTTTCCCTTCCCTCATTTCCTATTTCTTCCCTTTTTCC
TTTTTCCCTTCTCCCCTCTTTTTCTCCCCTCTATCCTCCTTTCCATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGGGGAGTAAGAGCAGCTGAG
CCATCTTCTGTCCTGGATGAATCTAAACTGTCTTTGTAGATGGCTGTACA
ATAATGTTAATTTCTCTGGTAAAATCAGAATCAATTACTCCAGGAACCAC
ATTTATTCACTGCACTGTGGTGGATATCCAGCCAATTATCAGTTCTCTGG
TCCTCTTAGAAAGGTGTTCATAAACTCTCATAAAAGGACAAACAACAGGA
GAGTCAGAGGTTAATATTCCTGTGTAGGTAGAACAAAGGTCCAGTCGTGT
GTCCACAGGGTTGTCAGCTGCAACTGTCAGTCCTATGTTGACAAATGGAT
TTATTGTTTGAGGTTGTTGAATTGCTCCTATTGTTTGAGGACCCAAGGGA
GGTCCCTCACACAGTTTTCCTGCCTTAATAGGATTCCTCTATTATTAGGG
ATTACTGTAGCACCAGATAAAGGAGTGATATTTTTTAATTTAATAATATT
TTTGGAGTACTTCAAAGGTAGCCCCCCCTTATACATGGTGGCCCCCTCTG
TTCCCTGAAATCTGTGCCTTAATGGCTGGATTAGATGCTTGGGATATCCC
TAAAGAGTCACATGAAACGGTGCCCCAGGGCGAGGTAATCTACCAGAAGC
GGTCATATAACCAGAGGGTAAGTTCCCAGGCACAGTACATTGCAGATATA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no418_p07.g1 MSMg01no418_p07.g1 CHROMAT_FILE:
MSMg01no418_p07.g1 PHD_FILE: MSMg01no418_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:38:18 2005
         (630 letters)



>mm_chr17_20743508_20744537
          Length = 1030

 Score = 1174 bits (607), Expect = 0.0
 Identities = 625/631 (99%), Gaps = 2/631 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagaggggagtaagagcagctgagccatcttctgtcctggatgaatctaaactgtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaggggagtaagagcagctgagccatcttctgtcctggatgaatctaaactgtcttt 260

                                                                       
Query: 61  gtagatggctgtacaataatgttaatttctctggtaaaatcagaatcaattactccagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtagatggctgtacaataatgttaatttctctggtaaaatcagaatcaattactccagga 320

                                                                       
Query: 121 accacatttattcactgcactg-tggtggatatccagccaattatcagttctctggtcct 179
           |||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||
Sbjct: 321 accacatttattcactgcactgatg-tggatatccagccaattatcagttctgtggtcct 379

                                                                       
Query: 180 cttagaaaggtgttcataaactctcataaaaggacaaacaacaggagagtcagaggttaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cttagaaaggtgttcataaactctcataaaaggacaaacaacaggagagtcagaggttaa 439

                                                                       
Query: 240 tattcctgtgtaggtagaacaaaggtccagtcgtgtgtccacagggttgtcagctgcaac 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattcctgtggaggtagaacaaaggtccagtcgtgtgtccacagggttgtcagctgcaac 499

                                                                       
Query: 300 tgtcagtcctatgttgacaaatggatttattgtttgaggttgttgaattgctcctattgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 500 tgtcagtcctatgttgacaaatggatttattgtttgaggttgttgaattactcctattgt 559

                                                                       
Query: 360 ttgaggacccaagggaggtccctcacacagttttcctgccttaataggattcctctatta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgaggacccaagggaggtccctcacacagttttcctgccttaataggattcctctatta 619

                                                                       
Query: 420 ttagggattactgtagcaccagataaaggagtgatattttttaatttaataatatttttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttagggattactgtagcaccagataaaggagtgatattttttaatttaataatatttttg 679

                                                                       
Query: 480 gagtacttcaaaggtagcccccccttatacatggtggccccctctgttccctgaaatctg 539
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gagtacttcaaaggtatcccccccttatacatggtggccccctctgttccctgaaatctg 739

                                                                       
Query: 540 tgccttaatggctggattagatgcttgggatatccctaaagagtcacatgaaacggtgcc 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgccttaatggctggattagatgcttgggatatccctaaagagtcacatgaaacggtgcc 799

                                          
Query: 600 ccagggcgaggtaatctaccagaagcggtca 630
           |||||||||||||||||||||||||||||||
Sbjct: 800 ccagggcgaggtaatctaccagaagcggtca 830


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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