NTTTCTTCAAAAATTGGGGCGCGTAAAGANNCCTAATTTCCAAAAGAACG
GGGAATTCAGAACTTTTCCGACTGGAGAACAGGAGTACCAGTGAGTACAG
CTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAAGTCAAGACAGT
CTATCAGAAGTAAAGTGGAAAATAGCTTTACAAGGTATGTTTGGCCTTGA
ACTTTTTCTAGTGTTAGGAGCCCTTTTGTTCTTTTTCACATGTTATCAAG
TGATTAAGATAGGGCTGAAAATTCTAGATGAAATTCAGGACAATCTATCA
GAAGTAAAGCGGAGAGAGAGAGTTGTATTTAAAAGGAAATATGGTGCACA
GAATAAGTATACAGGCCTTTCCAAGGGTCTTGAACCCAAGGAAAAGTTTA
GGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGANNAGAAAAAA
GAANAGATNAAAGATCCATTAGCGGAAGGCCTCTAGGAGAAACTCATCAC
TAAATGAGCTCAGGAAGCCAGCTCCTTATAACCTCTGAAGAAAAAGAAAA
ATTCTCCCTCTGAGAAACATAATTGGAAGGAAAGAACAAGCCTTTTCCCC
CCCAAAAAATGGGTTCCTTCCCCGCCCAAAAAAAAACCCAAAAAAACTGG
GGAAAACCCCATTTGTGTTTTCCCCCCCGGCCACCGGTTTTTAGTCCCGC
GCTATTATAACCCCCCCCCCTCCAATGCGCCCCCCCCTCCCCAAAAAAAT
CCGCCCTTATAAAACGCCCCAAAAAATTGTTTACAGCGTGGGCCGCAATC
TCCTCCTCTTATAAAAAAAG

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAATATCTGATAAGAACAAGACCAGTAAAAAGGA
TGACTTTAACAATGTATTCTACATGCCACACAGAGTGAAAAGGGAACTCA
TTGACTTCCTCCAAGATCAGGATGTCTTTGAATGGATGAGAAATAGTGTT
AGTCATTTGGGTGTCCTATCTCTCCTTTTCTTTTCTTTTCTTTTCTTTTC
TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC
CTTTCTCTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC
TTTTTTTTCTTTTCATTTTATCTAAAAAAATATTAGATATTATATTTACA
TTTCAAAAGTTACCCCCATTTCTAGTTTCCCCTCCGGAATCCCCTATTCC
CTCCCTTTCCCCCCGTTCACCAACCAACCTACTCCTGTTTCCTGGTCTGA
CATTCCCTTACACTGGGTAATTGAGCCTTCNAAGGACTTAGAGCCTTTCC
TCCCATTGATGACCTGAAATTCCATCCTCTGCTACATATGTGGATGGAGN
AAAAGCTCCCTCCACGGGGAATCCTTTGGTTGGTTGTTTAANCCCCGGAA
CCCGGGGGAAACTGGTTGGATCCTATTGCTGAACCCCCCAAGGGGGGGGA
AAAAACCTTCCGCCCTTGGGGCCCTTTTTTTTTATCCGCCAGGGGGGCCG
GTGGTTAAACCCAAGGGTGG

Query= MSMg01no419_j16.g1 MSMg01no419_j16.g1 CHROMAT_FILE:
MSMg01no419_j16.g1 PHD_FILE: MSMg01no419_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:12 2005
         (446 letters)



>mm_chr17_39179224_39180069
          Length = 846

 Score =  516 bits (267), Expect = e-151
 Identities = 348/421 (82%), Gaps = 71/421 (16%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatatctgataagaacaagaccagtaaaaaggatgactttaacaatgtattctacatgc 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 352 caatatctgataagaacaagaccagtaaaaaggatgactttaaaaatgtattctacatgc 293

                                                                       
Query: 61  cacacagagtgaaaagggaactcattgacttcctccaagatcaggatgtctttgaatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 cacacagagtgaaaagggaactcattgacttcctccaagatcaggatgtctttgaatgga 233

                                                                       
Query: 121 tgagaaatagtgttagtcatttgggtgtcctatctctccttttcttttcttttcttttct 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 232 tgagaaatagtgttagtcatttgggtgtcctatctctacttttcttttcttttcttttct 173

                                                                       
Query: 181 tttcttttcttttcttttcttttcttttcttttcttttcttttcttttcttttcctttct 240
           |||||||||||||||||||||||||||||||||||                         
Sbjct: 172 tttcttttcttttcttttcttttcttttcttttct------------------------- 138

                                                                       
Query: 241 cttcttttcttttcttttcttttcttttcttttcttttcttttcttttttttcttttcat 300
                                                       ||||||||||||||||
Sbjct: 137 --------------------------------------------ttttttttcttttcat 122

                                                                       
Query: 301 tttatct--aaaaaaatattagatattatatttacatttcaaaagttacccccatttcta 358
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tttatctaaaaaaaaatattagatattatatttacatttcaaaagttacccccatttcta 62

                                                                       
Query: 359 gtttcccctccggaatcccctattccctccctttccccccgttcaccaaccaacctactc 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gtttcccctccggaatcccctattccctccctttccccccgttcaccaaccaacctactc 2

            
Query: 419 c 419
           |
Sbjct: 1   c 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)