Query= MSMg01no419_p19.b1 MSMg01no419_p19.b1 CHROMAT_FILE:
MSMg01no419_p19.b1 PHD_FILE: MSMg01no419_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:41 2005
(352 letters)
>mm_chr17_16112753_16113504
Length = 752
Score = 540 bits (279), Expect = e-158
Identities = 297/305 (97%), Gaps = 4/305 (1%)
Strand = Plus / Minus
Query: 1 tttatagattatcactaaattcttatgtcaactacaaggtagataatgttatccctttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tttatagattatcactaaattcttatgtcaactacaaggtagataatgttatccctttta 242
Query: 61 accagtgattaagcccttacccaaagtcacactgttagaaagaaacaaggactgaaatcc 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 241 accagtgattaagcccttacccaaagtcacactgtt----agaaacaaggactgaaatcc 186
Query: 121 tcctctatgagtgacaatggatcgttacggctgctcaaactaaaacttttgtagtctccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tcctctatgagtgacaatggatcgttacggctgctcaaactaaaacttttgtagtctccc 126
Query: 181 aagttattcctgctgtatctaaaccttccacagactgcttctgttctatcttcaaaacat 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 125 aagttattcctgctgtatctaaaccttccacagactgcaactgttctatcttcaaaacac 66
Query: 241 atccagaatccagatagttctcaacacctctgttgtgaccagtttgctccaaaccccttc 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 65 atccagaatccagatagttctcaacacctctgttgtgactagtttgctccaaaccccttc 6
Query: 301 atatc 305
|||||
Sbjct: 5 atatc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space: 254849
Effective search space used: 254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no419_p19.g1 MSMg01no419_p19.g1 CHROMAT_FILE:
MSMg01no419_p19.g1 PHD_FILE: MSMg01no419_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:41 2005
(459 letters)
>mm_chr17_15928440_15929298
Length = 859
Score = 888 bits (459), Expect = 0.0
Identities = 459/459 (100%)
Strand = Plus / Plus
Query: 1 agatgtactgccaggaaattcatcttgttttacatactagaccagctctgtgacagctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatgtactgccaggaaattcatcttgttttacatactagaccagctctgtgacagctgt 260
Query: 61 agatgaggaaggccagctaaaccagactgtagaaatgaatcacttaaaggtgggagatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgaggaaggccagctaaaccagactgtagaaatgaatcacttaaaggtgggagatgg 320
Query: 121 agacattgaagaactagggctacaacgtcctagatgcctatctgaagctcatccttgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacattgaagaactagggctacaacgtcctagatgcctatctgaagctcatccttgcct 380
Query: 181 ccagcaggagtttggatgatagtcaatatttccttttatcatttccatattcgatgggtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcaggagtttggatgatagtcaatatttccttttatcatttccatattcgatgggtg 440
Query: 241 gagtgaagagagcaatttgtcctttcttcctctctgaaacttggcacattgcctcagttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagtgaagagagcaatttgtcctttcttcctctctgaaacttggcacattgcctcagttt 500
Query: 301 ttgtttagtaatttcattgtttaccctaaacatttaaaaaacgcctctagatagctggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtttagtaatttcattgtttaccctaaacatttaaaaaacgcctctagatagctggaa 560
Query: 361 atgacatagcagtatgtgtgggcaaagataacagaggtgagtgtagttgtttagggttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgacatagcagtatgtgtgggcaaagataacagaggtgagtgtagttgtttagggttgg 620
Query: 421 tatagcttagtgagcttgagaaggagaataaggctctca 459
|||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tatagcttagtgagcttgagaaggagaataaggctctca 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
