BAC Information

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BAC

Clone NameMSMg01-420E24
Chromosome17 (Build37)
Map Location 84,902,554 - 84,902,983
singlet/doubletsinglet
Overlap genenone
Upstream geneCox7a2l, Kcng3, Mta3, Haao, Zfp36l2, Thada
Downstream genePlekhh2, Dync2li1, Abcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420E24.T7 (MSMg01no420_e24.b1)MSMg01-420E24.TJ (MSMg01no420_e24.g1)
ACCAG515207AG515208
length731768
length of high quality
(start - end)
156 (458 - 613)437 (65 - 501)
definitionCHROMAT_FILE: MSMg01no420_e24.b1 PHD_FILE: MSMg01no420_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:07 2005CHROMAT_FILE: MSMg01no420_e24.g1 PHD_FILE: MSMg01no420_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTATATTTGCGGGCGCTATACGAGTCCCATTGTTGCGAAGAGGCGCG
GAANTCCNCATTCTATCTCCAAAAAAAATANTTGGGAAAAAAAAGGTCTT
AAAGAGATCTGGGACCCCTGACTGAGATGGGCAGGCTTGCTCTAGGAATT
GAGAAAGAAAAATCAGCGAGTATTTTCCTTTCTTGTGATTCTCTCCTCCC
CGCCAGAAATTTATGGGCAGGTGAGGCACGCGCAATAGAAAACATGAGTT
TATTCTCCATGTGAAACTTTATCTACATCTGGGCGGAGACTGCGAACTCT
CAAAAGAATGAGATCTTTTTCTCTTTATAGATAGATAGGGGGCCACGGGA
AGAGAGGGTCTAACCAGAAGATATTCCCGGAACCAACAACCCTAATTCCA
TTCTCGGTTCCTGGGCCCCTTTCGGAGGCCAAAACGGCTGCCACTAGAGT
CTCAGGGAGTTATTTCACATGTACATCTCTGTATCACAATTAGCGCAGGG
AGTAAGCCCTGATAGAGAGAGGAGTGGACACCAGTTTGCCTTANAGACAA
AAGGGAAAATGAGCCGCTGAAACCCCCCTGAGCAGAGGTGAACCTTTGTA
CTTTGCCATTTTGTCCAAGGCCTGATCCAGCGTTTACAGTTAGTCAGTCA
CACCAGTGACACCAAAGGGAGACAGNTCTAGACAGACAAGGGAACAGGTC
TCCTGATAACCCAACTGGCAGCCGATTAGGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGGGGCTTGCTGGACTTGACCTTACTAGGTGAGGG
GAAGTCTAACTGGCTACTGGGCTATATGATCTCCTCAGGTGGGACAAAGG
TCTGTGTACACTGGGAGATGTAGGCTTGGGGTTGGGGAGTGTGGGTGTGG
CAATTCTACTCCTGCTGCTTCATGACCAGATATCTGGGGTTTGGACACAC
CCCGACCACACTCTTCTCCAGGCTTACTCCCCACGGCTCCTCCAGCCCCA
CAACATTGCTGAGAATATGTGACTGATCACCTCTGTAGCAAGTCTTCTCC
TGAAAGGCTCAGGGAACATCTTGGAACAGGAGGCAGAAAGTCTGTAGGAG
CCGAAGGACTGGGGAGTGCTGTGAAATTCGGTCCGCTGTATCTGACACGG
CCATTACCCTCATGAACTCACAGCAACTCCGGTTGTCTGCTCAAGACCTA
CACTAGATCAAGCCAATGTAAATTCCATGGATGGGAGAGTGACTTGCCAG
GCTCCGCTCCTTACACGAGAGGAAGGGATTGTGTTTGGATCTCCGTATAA
TCATTTTTCCTTGGTAACGTGATCCCTTGGAACTTGCCCACACTTTTTGG
AATTTTTTAACCTTTTCTCTATACATTGGTTTCTATGATTTTATTCCTTT
CGCTTTTTTTATATCATCTACCACCCTCCCCTCTCTCCCCCTCTCTTTCC
CCTCTTCTCCCCCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_e24.g1 MSMg01no420_e24.g1 CHROMAT_FILE:
MSMg01no420_e24.g1 PHD_FILE: MSMg01no420_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:07 2005
         (437 letters)



>mm_chr17_84902554_84903391
          Length = 838

 Score =  785 bits (406), Expect = 0.0
 Identities = 424/430 (98%), Gaps = 1/430 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggggcttgctggacttgaccttactaggtgaggggaagtctaactggctactgggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caggggcttgctggacttgaccttactaggtgaggggaagtctaactggctactgggcta 371

                                                                       
Query: 61  tatgatctcctcaggtgggacaaaggtctgtgtacactgggagatgtaggcttggggtt- 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 370 tatgatctcctcaggtgggacaaaggtctgtgtacactgggagatgtaggcttggggtta 311

                                                                       
Query: 120 ggggagtgtgggtgtggcaattctactcctgctgcttcatgaccagatatctggggtttg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggggagtgtgggtgtggcaattctactcctgctgcttcatgaccagatatctggggtttg 251

                                                                       
Query: 180 gacacaccccgaccacactcttctccaggcttactccccacggctcctccagccccacaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 gacacaccccgaccacactcttctccaggcttactccccacggctcctccagccccacaa 191

                                                                       
Query: 240 cattgctgagaatatgtgactgatcacctctgtagcaagtcttctcctgaaaggctcagg 299
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cattgctgagaataagtgactgatcacctctgtagcaagtcttctcctgaaaggctcagg 131

                                                                       
Query: 300 gaacatcttggaacaggaggcagaaagtctgtaggagccgaaggactggggagtgctgtg 359
           |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 130 gaacatcttggaacaggagggagaaagtccgtaggagccgaaggactggggagtgctgtg 71

                                                                       
Query: 360 aaattcggtccgctgtatctgacacggccattaccctcatgaactcacagcaactccggt 419
           |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  aaatgcggtctgctgtatctgacacggccattaccctcatgaactcacagcaactccggt 11

                     
Query: 420 tgtctgctca 429
           ||||||||||
Sbjct: 10  tgtctgctca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 838
Length adjustment: 9
Effective length of query: 428
Effective length of database: 829
Effective search space:   354812
Effective search space used:   354812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)