BAC Information

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BAC

Clone NameMSMg01-420H15
Chromosome17 (Build37)
Map Location 34,157,352 - 34,157,513
singlet/doubletsinglet
Overlap genenone
Upstream gene1700065O13Rik, 4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352
Downstream geneRing1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420H15.T7 (MSMg01no420_h15.b1)MSMg01-420H15.TJ (MSMg01no420_h15.g1)
ACCAG515333AG515334
length787773
length of high quality
(start - end)
175 (143 - 317)---
definitionCHROMAT_FILE: MSMg01no420_h15.b1 PHD_FILE: MSMg01no420_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:20 2005CHROMAT_FILE: MSMg01no420_h15.g1 PHD_FILE: MSMg01no420_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:40:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAACCATCATAAGTTGCGGCGCTATANGANTANAACTACGAATCGAGGGN
NGNANNTCTTAATAACCAAGGATAGGTTTGANGGNCAATCTTCCGGGGCC
GGCCAAACAAAGTTGTTAATAACAGGAATTGGCTACAAGGGTTCCTCCCT
CTCATTTGTATTTTTGAAGAAGGGGATGGAGTTATGGAGTTCACCTTTGG
AATCACCTTCCTATTTACAGCCCGGATTTCCTGTGAGTTTGAAGCTTTCC
TTCCCAATTAAAAGTGGTTTTTGTTTGTTTTTTGGCTGTTGGTTTTTGTT
GTTGTTTTGGGGGGTTTCGTAATTATCCAAACCCCCAACACCCCCCCCCA
CAAACTCTTTTTTCCCCGTTTACCTTTAACGGGCCCCCCTTTTTTTTCCA
TACTTTCGCGCGTACTATCCGTTCCACCCTTTTTTTTTCTATCCTTTTTG
GTCCCTTTTTTTCCTTTCCCTTTTCCCTACCCTTCTGCTATTTTTTCCTC
TTTCTTTTTTTTTCCTTCTTCGCCTTCTCTTTTCCCCTCTCCCTTTTTTT
CCCTTTCCCTTTCCCCCCCCCGCTTGTTTTTCGTCCTTTTTTTCTCTTTT
ATCCCACCCCCTTTTTCTCCCCTTTTTTCTTTTGTGTCATATTCCCCCCG
CATTCCCATTTCTTTCTTCCNTCCCTCACTTCTTCACTCGCTCCCCTCCT
TTATTTCTCCATACCCAACTNATGCAACTACCAACCCCCACCCGCTTAAC
TAACTCCTTTTTTTGCCTCCCCTCCCCGCCCTCATCC
AGAATTTATGCGGGTTGAGCCTCCCCTATCAATAGGAGAACAAAAGATTG
CCCGCGTTAACCTGAAGGGCTATTACATAAACTATGAGACGGTTGCAACC
CATTGCCACATTGAATGAACTTCTCTAGACATTTTTTAAATTTATAATGG
ACTGTTATAACACAATAAGATTTTCGTAATATTCCTCGACATCTAGAATA
CATGTGTGTTGTGACTAAGTTAGATTCGATGTAGGATAAAGGTATAGAGC
TTTACTATCTTCAGAACGGCGCATGGACTGTTGAGTAAGAAACCCTACCG
AATGTTTAAATTTACTAAGTGGCCCCTTTTATTATAGGACTACATCGTTT
TTTTATGCCGTGCCGCCGTCTCCATATCACGCGAGTTGTCCGTTATTGAT
CTTCATTAGTTCCTACTCTTTACCTATTCGAAATACATAACCCTCATCTT
ATGAAAATCGCTTTATGAGGTTTTAACATAGTCCCACCCCTATTAATTGC
GGTGCTTTGTACGATCGACAGCTCAATCCAAGCCAGCAATCTTTTACGAT
TCATATGCTCTCACTGTCTTTGCTCATCTCTGTGTGGTCAGCGTTTCACC
ATGGTCTCCCGATTTTCTTTTTTTTTCCACACTTTTTACTCATCCTTTTT
ACCACACATTTACTTTCTTCCCCTTACATTTACTCCCTGCTGATTTTTCC
ACCTCTCCCGTTCTCCTATTCCTTTCATTATTCCCAGCTACCCCGATCAC
CGTTTTATTTTATAGTAGCGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_h15.b1 MSMg01no420_h15.b1 CHROMAT_FILE:
MSMg01no420_h15.b1 PHD_FILE: MSMg01no420_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:40:20 2005
         (175 letters)



>mm_chr17_34157152_34157726
          Length = 575

 Score =  246 bits (127), Expect = 7e-70
 Identities = 156/167 (93%), Gaps = 6/167 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctccctctcatttgtatttttgaagaaggggatggagttatggagttcacctttggaa 60
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 201 tcctccctctcatttgtatttttgaagaaggggagggagttatggagttcacctttggta 260

                                                                       
Query: 61  tcaccttcctatttacagcccggatttcctgtgagtttgaagctttccttcccaattaaa 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaccttcctatttacaacccggatttcctgtgagtttgaagctttccttcccaattaaa 320

                                                          
Query: 121 agtggtttttgtttgtt-ttttggctgttggtttttgttgttgtttt 166
           ||||||||||||| ||| ||||||  |  || ||||||| |||||||
Sbjct: 321 agtggtttttgtt-gttgttttgg--g--gggttttgtttttgtttt 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 575
Length adjustment: 8
Effective length of query: 167
Effective length of database: 567
Effective search space:    94689
Effective search space used:    94689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)