Query= MSMg01no421_f13.b1 MSMg01no421_f13.b1 CHROMAT_FILE:
MSMg01no421_f13.b1 PHD_FILE: MSMg01no421_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:29 2005
(655 letters)
>mm_chr17_77090648_77091696
Length = 1049
Score = 1162 bits (601), Expect = 0.0
Identities = 636/651 (97%), Gaps = 6/651 (0%)
Strand = Plus / Minus
Query: 5 gaattcttcatttctgtcaattaattttatcatcttataatatatgacattatatgatgt 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gaattcttcatttctgttaattaattttatcatcttataatatatgacattatatgatgt 896
Query: 65 catatattataacatctcatgttatatgttatatgttatattgcatgtagcaatatacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 catatattataacatctcatgttatatgttatatgttatattgcatgtagcaatatacag 836
Query: 125 aattgatcaaaaaaacttgacctatttaattggagaggtgtagcatttgtttaagaattc 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 aattgatccaaaaaacttgacctatttaattggagaggtgtagcatttgtttaagaattc 776
Query: 185 tattttacatttaacttactctatcctatgtgttcactatgtggtattttaggaaaacag 244
||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tat------tttaacttactctatcctatgtgttcactatgtggtattttaggaaaacag 722
Query: 245 ccctcatacagtgtgaataatgtcagagttttctttctattagtattcaggctttgggct 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 721 ccctcatacagtgtgaataatgtcagagttttcacactattagtattcaggctttgggct 662
Query: 305 agggaacaaagttgccagcagacttgaagatgtgtttagaatacattccgtgttaaaagc 364
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 661 agggaacaaagttgccagcagacttgaagatgtgtttagaatacattctgtgttaaaagc 602
Query: 365 cctttcagtgattcaaactacagacgatttttacttttattaagctagaaaaattggaaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cctttcagtgattcaaactacagacgatttttacttttattaagctagaaaaattggaaa 542
Query: 425 ggaaagatcgccagttttcctttgggtaggaggggatgtcttaatatctttactgagaat 484
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaaagatggccagttttcctttgggtaggaggggatgtcttaatatctttactgagaat 482
Query: 485 caaaatgttaggtgtatgcaaatttgcccttttacaatatgaaccaatgtatccatctcc 544
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 481 caaaatgttaggtgtatgcaaatttgcccttttacaatatgaaccaatgtgtccatctcc 422
Query: 545 acacaaagagaggagaaaggcaatcccaaggtcgggtttccaaaacactctattgtacaa 604
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 421 acacaaagagaggagaaaggcaatcccaaggtcaggtttccaaaacactctattgtacaa 362
Query: 605 tggcaattcactgacctttgtgaaataaagatatattaagttgaaactgat 655
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggcaattcactgacctttgtgaaataaagatatattaagttgaaactgat 311
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1049
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1039
Effective search space: 670155
Effective search space used: 670155
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_f13.g1 MSMg01no421_f13.g1 CHROMAT_FILE:
MSMg01no421_f13.g1 PHD_FILE: MSMg01no421_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:29 2005
(557 letters)
>mm_chr17_76941420_76942376
Length = 957
Score = 1035 bits (535), Expect = 0.0
Identities = 553/561 (98%), Gaps = 4/561 (0%)
Strand = Plus / Plus
Query: 1 acatatttttaaagttcaaattctgattcttagtccatttaaccctagtattgttattga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 acatatttttaaagttcaaattctgattcttagtccatttaaccctagtattgttattga 256
Query: 61 caatctttatatcacacacatttctattactttttgttctcttagctctacataagagtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 caatctttatatcacacacatttctattactttttgttctcttagctctacataagagtg 316
Query: 121 tttcttctcttgagttcaataccttgttgcttcagaataacttgaactatatctttatcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tttcttctcttgagttcaataccttgttgcttcagaataacttgaactatatctttatcc 376
Query: 181 catgacttctcaataagtggtaagtttgtctcttatttttaaactataaactaatcactt 240
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 377 catgacttctcaataagtggcaagtttgtctcttatttttaaactataaactaatcactt 436
Query: 241 agacctatttcttagctaaagactgagctattagttgtagtctataggacctagttctga 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 437 agacctatttcttagctaaagactaagctattagttgtagtctataggacctagttctga 496
Query: 301 tccaaccacacaaaatgaaaaattatataaacatacacacacaccacacacacacaca-- 358
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 497 tccaaccacacaaaatgaaaaattatataaatatacacacacaccacacacacacacaca 556
Query: 359 --tataatcaacttcatatatgcacctgaacacatgcatagatttttcttgggcatatgt 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 catataatcaacttcatatatgcacctgaacacatgcatagatttttcttgggcatatgt 616
Query: 417 tgaatgactcattaaagcagagaagtagcagggccttgaggatatcagaaaattggagca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaatgactcattaaagcagagaagtagcagggccttgaggatatcagaaaattggagca 676
Query: 477 tgctgatggagggcctcagactttgtcttgaggtgctacacttaacttagttcccattat 536
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 677 tgctgatggagggcctcagactttgtcttgaggtgctacacttaatttagttcccattat 736
Query: 537 tgttcttgtctaaaaagaact 557
|||||||||||||||||||||
Sbjct: 737 tgttcttgtctaaaaagaact 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
