BAC Information

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BAC

Clone NameMSMg01-421F23
Chromosome17 (Build37)
Map Location 49,637,514 - 49,637,976
singlet/doubletsinglet
Overlap geneDaam2
Upstream geneLrfn2, 1700008K24Rik, LOC672972, Mocs1
Downstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-421F23.T7 (MSMg01no421_f23.b1)MSMg01-421F23.TJ (MSMg01no421_f23.g1)
ACCAG516015AG516016
length745760
length of high quality
(start - end)
433 (80 - 512)463 (82 - 544)
definitionCHROMAT_FILE: MSMg01no421_f23.b1 PHD_FILE: MSMg01no421_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:31 2005CHROMAT_FILE: MSMg01no421_f23.g1 PHD_FILE: MSMg01no421_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:41:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCTCTCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCCAAGTATTCCAGGCTGGCTGGCCAATAAGTCCTAATG
ACTTACCTGTCTCTACCTCCCTGGTTCTAGGATCATAGCATGTCAACCCA
TCTGGCTTTTAAAATGTGGATCTAGTCACTGGTTGGCAAGTCTCTCAATC
TCTGCTCCATTTTTATCCCTGTACATCTTGTAGGCACGACAAATGTTGGG
TTGAAGGTTTTGTGGGTGGGTTGATGTCCCCTCCCTCCACTGGAAGTGCC
ACCTGGCTATAGGAGGTGGCCGCTTCAGTCTCCATAACCCCCGGTGGTGC
CCCAGGATGGGGTAGTACCCAAGGGGCCTTCTTCTCTGAGGAGAAGGGGA
GGGCGTTAAGGGAGAAGCACTTTATAAGGATGGGACTGGAAGAAGAAGAT
AGATGGAGGGCTAGGATTGGGATGTAAAGTGAAAAAATAATAATTAAAAT
AGTAGTAGTAGTAGTTGTTGTTGCTGTTCCTATCCTGTTTCTTTTTTCTA
CTACTATACCTTTTATTACCTATACTTTTCTATTCAATACTCCCATCCTC
CTTTTCCTCTATCGCTCCTTCCGTATCTTCTTTTCTTTCATTTTCTCTAC
CTTCTCTCCTTTTACTACTTTTTCTCTTCTCCTTCCTCTTTATATTTACT
ATTACTTCTCGATTTTCTTCATATCCTCTTCTTTATATAAATAAT
NNNNAACCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAAATGAGGATGA
CCTTGAACTCCAGACCTCCTGCCTCCACTTCCCAAATGCACCACACCTCT
GGCTCATCATTTCTTTCAGACTAAGTCTTCAAAAGCCCCACTCTCTCTGT
TCTGATTGGGCAGCCAGCAGCTCAGCTCACCCCAGGAGGCCAGCTGCTGC
CATCAGACAGTTCACACCACAGTGCTTTAAAACAATGCTCATTGGCTTGT
CTAAGAGAGGAATGCTATTGAGAGTTCTCAACATCTCTTTTCATCATCTG
ACACTTCCTAATGGCAGCCAGGCTGGTCCAGAACCAAAGGAAACTGGAGA
CAGATCCTTTCTTCTGGGATCCGTTTCATGTCTGTTTCCTCTACAAGAAA
GGTGCTTTGGAAAGCCCACCTCACCCCTAAAGAAAGCTTTGTGGAGTGGA
GAACATAGCACGCAGGCTCCTACCCTCTGCCCGTCTCTGCTTGACTGTCC
ACCCATTTTTCCACCATCGACGCCCTCCCAACCCTTTGCCCACTGACCAC
CAGCTCTGCAAAGCGGACATTGAGCTCTTTCCGGATTCGGGAAGGGACCA
GAGAAACTCCCAAACTGTCGTGGGTGGGTTGTCCCCGAAGTCAAAATCGG
AAAGGTCCTGCCTCCCAAAAAACAAAAGAAACCCCCCCCCTTGGGACTAC
TTCTGGGGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no421_f23.g1 MSMg01no421_f23.g1 CHROMAT_FILE:
MSMg01no421_f23.g1 PHD_FILE: MSMg01no421_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:31 2005
         (463 letters)



>mm_chr17_49637314_49638176
          Length = 863

 Score =  857 bits (443), Expect = 0.0
 Identities = 458/463 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtaaatgaggatgaccttgaactccagacctcctgcctccacttcccaaatgcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtaaatgaggatgaccttgaactccagacctcctgcctccacttcccaaatgcac 260

                                                                       
Query: 61  cacacctctggctcatcatttctttcagactaagtcttcaaaagccccactctctctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacacctctggctcatcatttctttcagactaagtcttcaaaagccccactctctctgtt 320

                                                                       
Query: 121 ctgattgggcagccagcagctcagctcaccccaggaggccagctgctgccatcagacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgattgggcagccagcagctcagctcaccccaggaggccagctgctgccatcagacagt 380

                                                                       
Query: 181 tcacaccacagtgctttaaaacaatgctcattggcttgtctaagagaggaatgctattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 381 tcacaccacagtgctttaaaacaatgctcattggcttgtctaagagaggaatgctatcga 440

                                                                       
Query: 241 gagttctcaacatctcttttcatcatctgacacttcctaatggcagccaggctggtccag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 gagttctcaacatctcttttcatcatctgacacttcctaatggcagccaggttggtccag 500

                                                                       
Query: 301 aaccaaaggaaactggagacagatcctttcttctgggatccgtttcatgtctgtttcctc 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 aaccaaaggaaactggagacagatcctttgttctgggatccgtttcatgtctgtttcctc 560

                                                                       
Query: 361 tacaagaaaggtgctttggaaagcccacctcacccctaaagaaagctttgtggagtggag 420
           |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 561 tacaagaaaggtgctttggaaagcccacctcacccctaaagagagccttgtggagtggag 620

                                                      
Query: 421 aacatagcacgcaggctcctaccctctgcccgtctctgcttga 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacatagcacgcaggctcctaccctctgcccgtctctgcttga 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)