Query= MSMg01no421_j08.b1 MSMg01no421_j08.b1 CHROMAT_FILE:
MSMg01no421_j08.b1 PHD_FILE: MSMg01no421_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:48 2005
(530 letters)
>mm_chr17_48006146_48007076
Length = 931
Score = 917 bits (474), Expect = 0.0
Identities = 507/518 (97%), Gaps = 1/518 (0%)
Strand = Plus / Plus
Query: 14 gaattcttcaccccattacccagcttttctggaaaattggtctggcctag-aatgcccgc 72
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 214 gaattcttcaccccattacccagcttttctggaaaattggtctggcctagcaatgcccgc 273
Query: 73 ctgccccccccactcccacctggggacagaggaccctagtctgagggcctgagggatggg 132
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 274 ctgccccccccactcccacctggagacagaggaccctagtctgagggcctgagggatggg 333
Query: 133 actcaggtcccatcgtctggttcagtctacgcccaccctttctctgaactcaggcttgaa 192
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 334 actcaggtcccatcgtctggttcagtctacgtccaccctttctccgaactcaggcttgaa 393
Query: 193 atcagaggcacacactggtctggaagcagggcttaggctaagagtggggtgtggtcttta 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 atcagaggcacacactggtctggaagcagggcttaggctaagagtggggtgtggtcttta 453
Query: 253 ccctccttcccacctacggccctcctctagggcaaagcctggggcaggccagaggggagc 312
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 454 ccctccttcccacctatggccctcctctagggcaaagcctggggcaggccaaaggggagc 513
Query: 313 agtgggctcagtcacctggtagctggcgttaagtgccccataactgaggcccgagatcat 372
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 514 agtgggctcagtcacctggtagctggcgttaagtgccccgtaactgaggcccgagatcat 573
Query: 373 gttcttcaccagagtggggctcctacgggagagaaggtaatctcaactcacacatccaca 432
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 574 gttcttcaccagagtgggactcctacgggagagaaggcaatctcaactcacacatccaca 633
Query: 433 gacgacctccctctgactcagagccgggatgaaaagatgcgcctcactctcgcactgctg 492
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 634 gacaacctccctctgactcagagccgggatgaaaatatgcgcctcactctcgcactgctg 693
Query: 493 ggaacctgtagctggatccttgtgatcctctctgctgt 530
||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ggaacctgtagctggatccttgtgatcctctctgctgt 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 931
Length adjustment: 10
Effective length of query: 520
Effective length of database: 921
Effective search space: 478920
Effective search space used: 478920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no421_j08.g1 MSMg01no421_j08.g1 CHROMAT_FILE:
MSMg01no421_j08.g1 PHD_FILE: MSMg01no421_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:41:49 2005
(464 letters)
>mm_chr17_48234945_48235808
Length = 864
Score = 868 bits (449), Expect = 0.0
Identities = 458/461 (99%)
Strand = Plus / Minus
Query: 1 actccagctctaacgtcattttggaccctgcaagggctgtggccgctcaaagaatagaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 actccagctctaacgtcattttggaccctgcaagggctgtggccgctcaaagaatagaac 602
Query: 61 ctcattagcatcttgctttgaatatcatttgcattttattcatctcctgtcaaaacgctc 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 601 ctcattagcatcttgctttgaatattatttgcattttattcatctcctgtcaaaacgctc 542
Query: 121 agaacacttcctcagccctcagttttttccttctgctggagagtcttaggctcccatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 agaacacttcctcagccctcagttttttccttctgctggagagtcttaggctcccatctc 482
Query: 181 aagcagatttcctgggagccccacccttgccgtcctcgggtggccacagtccccacccaa 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aagcagatttcctgggggccccacccttgccgtcctcgggtggccacagtccccacccaa 422
Query: 241 agggctgatctctagacgtctctgcaagttctaggctctgtcctaagaatgccattctaa 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 421 agggctgatctctagacgtctctgcaagttccaggctctgtcctaagaatgccattctaa 362
Query: 301 acccttacagcatccactgagcaaagtactccgtgagagctgaggaggaaactgagtttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acccttacagcatccactgagcaaagtactccgtgagagctgaggaggaaactgagtttc 302
Query: 361 aaaggtgcctttgtccgccaggtgttagaactaaacaatcaggaacgatgaacttaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaaggtgcctttgtccgccaggtgttagaactaaacaatcaggaacgatgaacttaaatc 242
Query: 421 caagaaaacaggacgttgaaaccaaaaggcttcgccacttg 461
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caagaaaacaggacgttgaaaccaaaaggcttcgccacttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space: 387716
Effective search space used: 387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
