BAC Information

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BAC

Clone NameMSMg01-423B14
Chromosome17 (Build37)
Map Location 82,396,744 - 82,623,706
singlet/doubletdoublet
Overlap geneLOC625467
Upstream geneTmem178, Thumpd2, LOC100043700, LOC100043704, Slc8a1, EG668832, LOC100043707
Downstream geneLOC668836, EG433141, EG625514, LOC100043711, LOC100043900, AW548124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423B14.T7 (MSMg01no423_b14.b1)MSMg01-423B14.TJ (MSMg01no423_b14.g1)
ACCAG517334AG517335
length747743
length of high quality
(start - end)		504 (34 - 537)552 (65 - 616)
definitionCHROMAT_FILE: MSMg01no423_b14.b1 PHD_FILE: MSMg01no423_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:42 2005CHROMAT_FILE: MSMg01no423_b14.g1 PHD_FILE: MSMg01no423_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:42 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(82,623,404 - 82,623,706)(82,396,744 - 82,397,295)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTTCTA
CATGGAAGTCAGCATGGCTACTCAGTGTGATTTCCTATCTCTCCTTATAA
AGAGTATTGTACAACTTTTCATTAGATTAGTTCTAGGGGAACATAACTGC
TCCTGTTGACATCATAGGGTTCCTTTTATCAAACAAAGGCAAAAATAGAG
CACTGCTGGGTTCCTTTTCTCCTTCCTTTTTAAATTTTCACATAGAAAGC
TAAAAACTAAGCAATGCACAAAGTAAAGTGACCATCACTTTGGTTCTTTA
TAGGACTTTGGTCTTAAAATTCACGTGAAAATGCTTGCTTTAAAATTAAG
GGATAATTAGTGTCTTATGAAATGGTAACTGTAAACGATATTTAAAAAAG
AACTATAGTCAGTAAAATAGCCACAGTTCCCTTTAAATGTCGGATCCCAT
GTTGTTTTCATTTGACTTGCATTTAATCAATTAAGTAATTTCACTGGTAA
TAAAAGGGGAAGAAAAAAAAAGAATTTTATCTGACCTTCAAATGTCTCTA
TCACAGTTTAAACTTACTAATTTACTTGGTTTGTTATTTTGGTTAATTTT
CCTTTTTTCTGCTTAATTTGAGAACTTTGAAACTGACAGTGACTACGTTG
CATTTTATTATACACAAAAATGATTTTTTATGTAAATACCTTTTGAATAA
ATCAGGAGTATATTCCCTTTGCTTTCATTTAATGGACGGAAAATTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGTTGAGCCTTAATAAAGTCTCTCGAGGAGATGTGG
GCCTTGGTCCGTTCATTATTGTAGGACAACACAAAGCTAGAGAGGCTTCC
TTAGCATGATGTTAGAAAATACCGTCTGCTGAAGTCTAAGAGGGGCATCC
GCTTGGGCTACACAGATCTCTTGGCTCTATGCTGAACCCATCTACAACTC
CTTCCTGAATATTGATGCCCCCTTTCACATAAAAAGAAGTGAGTATTAAT
ACACACAGGTGCTCTAGATCTGGGCTTTCCATTTCTCTCTTTTAAATCAG
CTCTTCCCTTATCACTGTAGAAATGATTCAGATGAGACATATCTCTGCAT
TTTCTCACCTTGCACAGGTATAGATCATTAGATTTTGCAACTTGTGTAGT
ATGCTTTTTGTTTTCAGAATCGGCTTCTAGAAATTTCAACGAAGCAATCT
TTTATTTCCTCTCAATTATTGTTCATTGAAATCTAAATCAAAGTTACCCT
GTGTGTCTGTTGACTATCATACTGAGCAGAGTGGGCCTAAACAGAAGTTT
TTACATATCTTTTCTAGAGAACTCCAAAATTTATAATTTATTGTGGGGAG
CCATGAGCAATTGCCATCATGAGCCTCCGCTGTGCCTAACTGGTAAACAG
TAATGTGCGCAGGTGCAAGAGTAAATTCTTGCCCATCACTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_b14.b1 MSMg01no423_b14.b1 CHROMAT_FILE:
MSMg01no423_b14.b1 PHD_FILE: MSMg01no423_b14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:42 2005
         (504 letters)



>mm_chr17_82623200_82624103
          Length = 904

 Score =  547 bits (283), Expect = e-160
 Identities = 298/303 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttctacatggaagtcagcatggctactcagtgtgatttcctatctctcctta 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaattcatttcaacatggaagtcagcatggctactcagtgtgatttcctatctctcctta 448

                                                                       
Query: 65  taaagagtattgtacaacttttcattagattagttctaggggaacataactgctcctgtt 124
           |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 taaagagtattgtacagctttccattagattagttctaggggaacataactgctcctgtt 388

                                                                       
Query: 125 gacatcatagggttccttttatcaaacaaaggcaaaaatagagcactgctgggttccttt 184
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 387 gacatcatagggttccttttatcaaaaaaaggcaaaaatagagcactgctggattccttt 328

                                                                       
Query: 185 tctccttcctttttaaattttcacatagaaagctaaaaactaagcaatgcacaaagtaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tctccttcctttttaaattttcacatagaaagctaaaaactaagcaatgcacaaagtaaa 268

                                                                       
Query: 245 gtgaccatcactttggttctttataggactttggtcttaaaattcacgtgaaaatgcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtgaccatcactttggttctttataggactttggtcttaaaattcacgtgaaaatgcttg 208

              
Query: 305 ctt 307
           |||
Sbjct: 207 ctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no423_b14.g1 MSMg01no423_b14.g1 CHROMAT_FILE:
MSMg01no423_b14.g1 PHD_FILE: MSMg01no423_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:42 2005
         (552 letters)



>mm_chr17_82396544_82397495
          Length = 952

 Score = 1036 bits (536), Expect = 0.0
 Identities = 548/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttgagccttaataaagtctctcgaggagatgtgggccttggtccgttcattattgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttgagccttaataaagtctctcgaggagatgtgggccttggtccgttcattattgtag 260

                                                                       
Query: 61  gacaacacaaagctagagaggcttccttagcatgatgttagaaaataccgtctgctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct: 261 gacaacacaaagctagagaggcttccttagcatgatgttagaaaacaccatctggtgaag 320

                                                                       
Query: 121 tctaagaggggcatccgcttgggctacacagatctcttggctctatgctgaacccatcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctaagaggggcatccgcttgggctacacagatctcttggctctatgctgaacccatcta 380

                                                                       
Query: 181 caactccttcctgaatattgatgccccctttcacataaaaagaagtgagtattaatacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactccttcctgaatattgatgccccctttcacataaaaagaagtgagtattaatacac 440

                                                                       
Query: 241 acaggtgctctagatctgggctttccatttctctcttttaaatcagctcttcccttatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaggtgctctagatctgggctttccatttctctcttttaaatcagctcttcccttatca 500

                                                                       
Query: 301 ctgtagaaatgattcagatgagacatatctctgcattttctcaccttgcacaggtataga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtagaaatgattcagatgagacatatctctgcattttctcaccttgcacaggtataga 560

                                                                       
Query: 361 tcattagattttgcaacttgtgtagtatgctttttgttttcagaatcggcttctagaaat 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 tcattagattttgcaacttgtgtagtatgctttttgttttcagaattggcttctagaaat 620

                                                                       
Query: 421 ttcaacgaagcaatcttttatttcctctcaattattgttcattgaaatctaaatcaaagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcaacgaagcaatcttttatttcctctcaattattgttcattgaaatctaaatcaaagt 680

                                                                       
Query: 481 taccctgtgtgtctgttgactatcatactgagcagagtgggcctaaacagaagtttttac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taccctgtgtgtctgttgactatcatactgagcagagtgggcctaaacagaagtttttac 740

                       
Query: 541 atatcttttcta 552
           ||||||||||||
Sbjct: 741 atatcttttcta 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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