BAC Information

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BAC

Clone NameMSMg01-423I22
Chromosome17 (Build37)
Map Location 54,751,623 - 54,752,133
singlet/doubletsinglet
Overlap genenone
Upstream genePcaf, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
Downstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423I22.T7 (MSMg01no423_i22.b1)MSMg01-423I22.TJ (MSMg01no423_i22.g1)
ACCAG517685AG517686
length750744
length of high quality
(start - end)		514 (33 - 546)538 (60 - 597)
definitionCHROMAT_FILE: MSMg01no423_i22.b1 PHD_FILE: MSMg01no423_i22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:16 2005CHROMAT_FILE: MSMg01no423_i22.g1 PHD_FILE: MSMg01no423_i22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATGTCT
TACCCTGTAATCTTGGTCTTGTTGATCTTTACCTCTGGTTATCATCTCCT
CCATATTTACATACCTGGAATTATTGTTCATGCCAGAAGGCCTCTGTTGC
TTATTAATTTCCTTTTGGTCTTTTGCCTTAATATGCTCACCAGTCAGTCT
TTCTATAGAGGGAGAAGGGCTCTGAGCAGCTCAGAAGGAAAAAGGAGAAA
CAAGATGGAGCAAGACACAAAATGGAGACTGTTAAGGCTGTGCCCTCGTT
ACAGTTTACAAACAGAGATTCTTCTGTCCTTATTAATATATTCTATTTGG
CATAACATTCCCACCCTCCCAACTTCTCAGGTTTTAAAGATGTTTTTCTT
TAGCATCATGAATGTCTTCACTTTGCGGTATTATTTTTAGTTCAAAATGT
GCTCTACAGACATCTGCTTAGACTCTCACTTTGCATTGCTCTTCCTTCCA
TCCTATTGTTCATGTGGTTCTATTTATGTGAAAACCTAATTTTTTGTTTG
TTTTTGTTTTTAATTGTTGCTCTTTTCAATAGATATTTTATATGTAGTTT
TATCAGCTCTGGATGCTGCATACTCCTTTAAGAATTGTTCCCCTTTATGT
CCTTATTCTTTAGGGGGTCCCTTTCCCTATTTTAATGAAGCTTAGTTTCT
CAACCCTCCCCGTATTTAACCTTCTTTTGGCAGAATTTTCAGATTTATGT


XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGATCCCCAGCTAGTAGCATGTTTGGAGAAGGTTGTAGAG
TCTTTTGAAAGTGGAGTCTTGATGTAGGTTGTAAGTCACAGATCAAGCAT
TGAAGGTTTAGGACTGATCCCAATTGCTTCTGGTATCCTTCCTACCTGCA
GATATAACCTACATGACCAGCTTATTCATGCTCTTGCTGTCATGCTTTCT
CTACCACAATAAAATATATTACCTTGAACTGTAAATTAGAATTTAGTTTT
CCTTGTCTAGGAGGCTTCTTATGAGCTATTTCATTACACTAAAATATGAA
AGACTCACACTGAGAAGTGGGGATATTTCTGTTATCAACATGATCATGTA
GTATCTAGGGCATTTGGACTATGTTGTAGAAATAATGTGAAAGTTTAGAA
TAGAGGACAATAGAAACCCTTGGATGATGTAAGCAGAATTTAATAGGTTA
CTCTGCTAAGAGTTTGAAAGACCAAAAATCTGAGAATAATGTTAACAGGG
AAAACCTACTTCATGAATTTTATAAGGGGGAAAATGACTGGAATTACGAA
TTGGACTACAGGTAATTTAGATAATATTTTGACAAAAAGTCTAGGTGCAT
TTACCCATGTCCTCAAATTTTGAGTAAAGTTGAATTTTAAAGAAATTGGT
TATGTGCTTGACAGGACATTTTAAATCGGATTTTTTAGGTTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_i22.b1 MSMg01no423_i22.b1 CHROMAT_FILE:
MSMg01no423_i22.b1 PHD_FILE: MSMg01no423_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:16 2005
         (514 letters)



>mm_chr17_54751420_54752333
          Length = 914

 Score =  973 bits (503), Expect = 0.0
 Identities = 509/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaatgtcttaccctgtaatcttggtcttgttgatctttacctctggttatcat 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ggaattccaatgtcatagcctgtaatcttggtcttgttgatctttacctctggttatcat 655

                                                                       
Query: 64  ctcctccatatttacatacctggaattattgttcatgccagaaggcctctgttgcttatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ctcctccatatttacatacctggaattattgttcatgccagaaggcctctgttgcttatt 595

                                                                       
Query: 124 aatttccttttggtcttttgccttaatatgctcaccagtcagtctttctatagagggaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 aatttccttttggtcttttgccttaatatgctcaccagtcagtctttctatagagggaga 535

                                                                       
Query: 184 agggctctgagcagctcagaaggaaaaaggagaaacaagatggagcaagacacaaaatgg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 agggctctgagcagctcagaaggaaaaaggagaaacaagatggagcaagacacaaaatgg 475

                                                                       
Query: 244 agactgttaaggctgtgccctcgttacagtttacaaacagagattcttctgtccttatta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 agactgttaaggctgtgccctcgttacagtttacaaacagagattcttctgtccttatta 415

                                                                       
Query: 304 atatattctatttggcataacattcccaccctcccaacttctcaggttttaaagatgttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 atatattctatttggcataacattcccaccctcccaacttctcaggttttaaagatgttt 355

                                                                       
Query: 364 ttctttagcatcatgaatgtcttcactttgcggtattatttttagttcaaaatgtgctct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 ttctttagcatcatgaatgtcttcactttgcggtattatttttagttcaaaatgtgctct 295

                                                                       
Query: 424 acagacatctgcttagactctcactttgcattgctcttccttccatcctattgttcatgt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acagacatctgcttagactctcactttgcattgctcttccttccatcctattgttcatgt 235

                                          
Query: 484 ggttctatttatgtgaaaacctaattttttg 514
           |||||||||||||||||||||||||||||||
Sbjct: 234 ggttctatttatgtgaaaacctaattttttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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