BAC Information

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BAC

Clone NameMSMg01-423L02
Chromosome17 (Build37)
Map Location 76,304,163 - 76,456,795
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneLOC100043886, EG624348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-423L02.T7 (MSMg01no423_l02.b1)MSMg01-423L02.TJ (MSMg01no423_l02.g1)
ACCAG517789AG517790
length749739
length of high quality
(start - end)
605 (33 - 637)546 (65 - 610)
definitionCHROMAT_FILE: MSMg01no423_l02.b1 PHD_FILE: MSMg01no423_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:26 2005CHROMAT_FILE: MSMg01no423_l02.g1 PHD_FILE: MSMg01no423_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:44:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,304,163 - 76,304,762)(76,456,250 - 76,456,795)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAATTG
GCACTATCAAAAACTTGCTTTGATACTGGGCATGGTATATATCTCAATCC
TAATTAAGAAGCCAGTAGGATATCAGGAAGATAATGATTTCAAAGACAAC
TGAACCACACAGTGAGACCGTGTCAAAAATTAAGTGGAGCTGACTCTCTA
GGATCTAGGTAGTTATGCAGCGCTCATGTGACTTCTCATGGGACACCTAG
TTGTCCTTTGAAGGATAGCCTTCCTTTTCCTATACCCCAGATACCCCAGA
CCATCGCACTCGTGCCTCCTTTGATAATATCAGTCCCCTTTCTTTCTGGC
TTCTAAACTGAACTTTTCCATCATCACCCAAGAGAATTGACTGTAGTCTT
TTTCTTCTCAAGTAATTTTCTTTTGATTTGCACTTAGCACTCTGCTTCTC
CTGCTGACTGGTGGACATTTGGTCCAGGGGAAATAGCTAAGTATCACTGT
AAAAACTCCATGTTAGCTATGTATGTCTATGTGTACAACCTTGGGAGTAA
GTGTATGTGCACAGACACATATGTGCACACAAACATGTATGTGTCATAAG
TCAAATTCTAATGTGTATGTGTGTGTGTGTGTGTGCTGTGCGCCCCTCCC
CGTTTTCCCTTTNTCCCTTCCTTTCCTTCCCCTTTTTTCCCCCCTTTTCC
CCCGTCGCCCCTTTCTTTTCCTGCTCTTCCTTGTTTTTTTTGCCCTTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTCCAAAGTTGAGTATCCAGCATGGTAGCCACTAGA
CACATGGTGCTATTAAGTATTTGAAATGTTGTTCTTCAAACTGAGCTGTG
CCATGATTTTGAAAATGTACCATGGAAAAAAAAAGTGTTATAACTTCTTG
TGAACTAATTAGCTTATTGTATATTATAGTGATAAAAGTGAAGTTAGAGG
CTCTTAAAAGCTCCTAAAAGCTGGGGCATTTCCTTTTTAATGTCACTGTT
AAAAGATTTGAACTTATTTTCGTGACATGTATTTGTGCCTCATATTAGAC
TTTCTTTCTTTATTTGTATTTGAGGAGGGGTGCAAGACAATGTCTTATAT
ATCCTGAACTGGTCTCAAACTCTGTACAACAAAGAATCCTCTTATGTCCT
TTTCCTAAATGCTGCAATTATAGGTATAAACCACAATGCCAAGTTTATTT
GCTATCAAATATTTGTTTTTTTGGATTAAACCCAGGTCTTTGTGTAGTAG
ACTAAGCAAGCAGTTTACCAACTGAGCTATATCACCAGCCCATCACACAG
TATTTCTCTAGGATAATGTCTTACTTTTCATTCATTCATTCATTAATTTA
TTTATTCACTTTACATCTCAATCACTGCCCCTTCCAGTTTCCCCCTCCCA
CAGNCCCTCTTTCATTTCCTCATCCTCTTCATTTCAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no423_l02.b1 MSMg01no423_l02.b1 CHROMAT_FILE:
MSMg01no423_l02.b1 PHD_FILE: MSMg01no423_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:26 2005
         (605 letters)



>mm_chr17_76303960_76304964
          Length = 1005

 Score = 1152 bits (596), Expect = 0.0
 Identities = 599/600 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctgtaattggcactatcaaaaacttgctttgatactgggcatggtatatatctc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtaattggcactatcaaaaacttgctttgatactgggcatggtatatatctc 263

                                                                       
Query: 64  aatcctaattaagaagccagtaggatatcaggaagataatgatttcaaagacaactgaac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatcctaattaagaagccagtaggatatcaggaagataatgatttcaaagacaactgaac 323

                                                                       
Query: 124 cacacagtgagaccgtgtcaaaaattaagtggagctgactctctaggatctaggtagtta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacacagtgagaccgtgtcaaaaattaagtggagctgactctctaggatctaggtagtta 383

                                                                       
Query: 184 tgcagcgctcatgtgacttctcatgggacacctagttgtcctttgaaggatagccttcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgcagcgctcatgtgacttctcatgggacacctagttgtcctttgaaggatagccttcct 443

                                                                       
Query: 244 tttcctataccccagataccccagaccatcgcactcgtgcctcctttgataatatcagtc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tttcctataccccagataccccagaccatcgcactcgtgcctcctttgataatatcagtc 503

                                                                       
Query: 304 ccctttctttctggcttctaaactgaacttttccatcatcacccaagagaattgactgta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ccctttctttctggcttctaaactgaacttttccatcatcacccaagagaattgactgta 563

                                                                       
Query: 364 gtctttttcttctcaagtaattttcttttgatttgcacttagcactctgcttctcctgct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtctttttcttctcaagtaattttcttttgatttgcacttagcactctgcttctcctgct 623

                                                                       
Query: 424 gactggtggacatttggtccaggggaaatagctaagtatcactgtaaaaactccatgtta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 gactggtggacatttggtccaggggaaatagctaagtatcactgtaaaaacaccatgtta 683

                                                                       
Query: 484 gctatgtatgtctatgtgtacaaccttgggagtaagtgtatgtgcacagacacatatgtg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctatgtatgtctatgtgtacaaccttgggagtaagtgtatgtgcacagacacatatgtg 743

                                                                       
Query: 544 cacacaaacatgtatgtgtcataagtcaaattctaatgtgtatgtgtgtgtgtgtgtgtg 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cacacaaacatgtatgtgtcataagtcaaattctaatgtgtatgtgtgtgtgtgtgtgtg 803


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no423_l02.g1 MSMg01no423_l02.g1 CHROMAT_FILE:
MSMg01no423_l02.g1 PHD_FILE: MSMg01no423_l02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:44:26 2005
         (546 letters)



>mm_chr17_76456170_76457115
          Length = 946

 Score = 1056 bits (546), Expect = 0.0
 Identities = 546/546 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccaaagttgagtatccagcatggtagccactagacacatggtgctattaagtatttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ttccaaagttgagtatccagcatggtagccactagacacatggtgctattaagtatttga 567

                                                                       
Query: 61  aatgttgttcttcaaactgagctgtgccatgattttgaaaatgtaccatggaaaaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aatgttgttcttcaaactgagctgtgccatgattttgaaaatgtaccatggaaaaaaaaa 507

                                                                       
Query: 121 gtgttataacttcttgtgaactaattagcttattgtatattatagtgataaaagtgaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 gtgttataacttcttgtgaactaattagcttattgtatattatagtgataaaagtgaagt 447

                                                                       
Query: 181 tagaggctcttaaaagctcctaaaagctggggcatttcctttttaatgtcactgttaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 tagaggctcttaaaagctcctaaaagctggggcatttcctttttaatgtcactgttaaaa 387

                                                                       
Query: 241 gatttgaacttattttcgtgacatgtatttgtgcctcatattagactttctttctttatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gatttgaacttattttcgtgacatgtatttgtgcctcatattagactttctttctttatt 327

                                                                       
Query: 301 tgtatttgaggaggggtgcaagacaatgtcttatatatcctgaactggtctcaaactctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtatttgaggaggggtgcaagacaatgtcttatatatcctgaactggtctcaaactctg 267

                                                                       
Query: 361 tacaacaaagaatcctcttatgtccttttcctaaatgctgcaattataggtataaaccac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tacaacaaagaatcctcttatgtccttttcctaaatgctgcaattataggtataaaccac 207

                                                                       
Query: 421 aatgccaagtttatttgctatcaaatatttgtttttttggattaaacccaggtctttgtg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 aatgccaagtttatttgctatcaaatatttgtttttttggattaaacccaggtctttgtg 147

                                                                       
Query: 481 tagtagactaagcaagcagtttaccaactgagctatatcaccagcccatcacacagtatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 tagtagactaagcaagcagtttaccaactgagctatatcaccagcccatcacacagtatt 87

                 
Query: 541 tctcta 546
           ||||||
Sbjct: 86  tctcta 81


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space:   501696
Effective search space used:   501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)