BAC Information

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BAC

Clone NameMSMg01-424K06
Chromosome17 (Build37)
Map Location 17,528,303 - 17,528,860
singlet/doubletsinglet
Overlap geneRiok2
Upstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965
Downstream geneLix1, LOC383297, Lnpep, EG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424K06.T7 (MSMg01no424_k06.b1)MSMg01-424K06.TJ (MSMg01no424_k06.g1)
ACCAG518513AG518514
length741733
length of high quality
(start - end)
598 (47 - 644)554 (81 - 634)
definitionCHROMAT_FILE: MSMg01no424_k06.b1 PHD_FILE: MSMg01no424_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:39 2005CHROMAT_FILE: MSMg01no424_k06.g1 PHD_FILE: MSMg01no424_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATAATATCATTATTTGCAGATGATATGATAGTATACTTAAGTGA
CCCCCAAAATTCTACCAGGAAACTCTTAGAGCTGACAAACTCCCTTCATC
GAAGTGGTTAGATATAAGATTCACTAAAAAAAAAAAAAAAAAGAAAAAAA
AAAAAGGACTCTCCTATATACAAACGACAAACAGGCTGAAAAGGAACCAG
GGAAACAACACCTTTTACAATAGCCACAATAATATAAAATATCTTAGGGT
AACTCTAACCTAGCAAGTAAAAGACCTGTATGATAAGACTTAAAGTCTTT
GAAGAAGAAAATGAGAGAAGATATCAGAAGATAGAAAGATTTTTCCATAC
TCATGGATTAACATAGTAAAAATGGCCATCCTAGCAAAAGCAGTCTATGA
ATTCAGTGCATTCCCCATCAAAATTCCAACACAATTTTTTTAGATACCTT
GAAAGAACAATATGCAATTTCATTTGGAAAAACAAAAAACCTAGGATAGC
TAAAATAATCTTGTACAATAAAAGAAATTCTGGAGGTATCACAATTCCTT
ATCTCAAGCTGTTTTTATTAGCATAGAAACACACATATTGATCCACAGAA
TTGAAGATTGACCCCTATGTACACCCGATTTTTGATAAAGAAAGACAATT
TAATATACCATGGAAAAAAAGGAAACGTCTTTCACCAAAAG
GACTGGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGGAGCTTGTTGACTGGCA
CCAGGTTCAGTGAGAGACAGACCCTGTCTCAAACGAACAAGATGGGGAGT
GGCAGAGGAAGACTATATATGCTGGCCTCTGGCTTCAGCACACACGTGTA
CACACAAGGATGCATGTACACACAGAAGAATAAAGTAAAAAATAGCTAAT
AGTAGTTTCTATTACAGTTCTGGGGCTGTTCAGAAACATTTAGGATTTGG
CAGAGCAATAACAGTGAAATTCTCAAAAATGTAATTTTTTCATATTCCTT
CTAAACTTGTCTAAGAAAATTTACTTGATTTTCTAAATATAAAATTGAAA
TCTGTGAAGCATGTAATACATTAAAAGATAAAGTTTTGAGCCAGGCATGG
AGGTGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTT
CTGAGTTCGAGGACAGCTAGGGCTATACAGAGAAACCCTGTCTCAAAAAA
CCAAAAATAAAAGATAAAGTTTTCAGTACAGATATCTCGCAGTTCATTAA
ATAACCTTTTTGCTTTTCGCTTTTATACTCTTCTGTTCTTACTGGGATTT
ATCTGCCCCCTTTCTTTGATTTCGCACTATCAGAACAGAATTGGTTACAG
GCTCAGGCTTGTGTGGCCTTCTGTGTGCCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_k06.g1 MSMg01no424_k06.g1 CHROMAT_FILE:
MSMg01no424_k06.g1 PHD_FILE: MSMg01no424_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:39 2005
         (554 letters)



>mm_chr17_17528103_17529056
          Length = 954

 Score = 1033 bits (534), Expect = 0.0
 Identities = 549/558 (98%), Gaps = 7/558 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctggagcttgttgactggcaccaggttcagtgagagacagaccctgtctcaaacgaacaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagcttgttgactgtcaccaggttcagtgagagacagaccctgtctcaaacgaacaa 260

                                                                       
Query: 61  gatggggagtggcagaggaagactatatatgctggcctctggcttcagcacacacgtgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatggggagtggcagaggaagactatatatgctggcctctggcttcagcacacacgtgta 320

                                                                       
Query: 121 cacacaaggatgcatgtacacacagaagaataaagtaaaaaatagctaatagtagtttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacacaaggatgcatgtacacacagaagaataaagtaaaaaatagctaatagtagtttct 380

                                                                       
Query: 181 attacagttctggggctgttcagaaacatttaggatttggcagagcaataacagtgaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attacagttctggggctgttcagaaacatttaggatttggcagagcaataacagtgaaat 440

                                                                       
Query: 241 tctcaaaaatgtaattttttcatattccttctaaacttgtctaagaaaatttacttgatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcaaaaatgtaattttttcatattccttctaaacttgtctaagaaaatttacttgatt 500

                                                                       
Query: 301 ttctaaatataaaattgaaatctgtgaagcatgtaatacattaaaagataaagttttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctaaatataaaattgaaatctgtgaagcatgtaatacattaaaagataaagttttgag 560

                                                                       
Query: 361 ccaggcatggaggtgcacgcctttaatcccagcactcgggaggcagaggcaggtggattt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggcatggaggtgcacgcctttaatcccagcactcgggaggcagaggcaggtggattt 620

                                                                       
Query: 421 ctgagttcgaggacagctagggctatacagagaaaccctgtctcaaaaaaccaaaaataa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 ctgagttcgaggacagctagggctatacagagaaaccctgtctcaaaaaaccaaaaaaaa 680

                                                                       
Query: 481 aa-------gataaagttttcagtacagatatctcgcagttcattaaataacctttttgc 533
           ||       |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaaaaaaagataaagttttcagtacagatatctcgcagttcattaaataacctttttgc 740

                             
Query: 534 ttttcgcttttatactct 551
           ||||||||||||||||||
Sbjct: 741 ttttcgcttttatactct 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)