BAC Information

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BAC

Clone NameMSMg01-424K11
Chromosome17 (Build37)
Map Location 15,044,308 - 15,044,550
singlet/doubletsinglet
Overlap geneWdr27
Upstream geneEG635895, EG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236
Downstream geneLOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289, LOC100041639, LOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-424K11.T7 (MSMg01no424_k11.b1)MSMg01-424K11.TJ (MSMg01no424_k11.g1)
ACCAG518523AG518524
length751776
length of high quality
(start - end)
244 (66 - 309)243 (79 - 321)
definitionCHROMAT_FILE: MSMg01no424_k11.b1 PHD_FILE: MSMg01no424_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:40 2005CHROMAT_FILE: MSMg01no424_k11.g1 PHD_FILE: MSMg01no424_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:45:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATAGAGGATCCGCGGA
ATTCTGCCTTGTCCGTTGCCTGCGCTGCCTTCCAGATTCAAGGAGGCACA
GTCTAGGATGACAGCTTATGCTGTGGTGAGTGGAAGATGGCTGATGAGGA
GAGTATTGCAGCTCTGAAAGTGTCATCCACTTCTTGGGAAACCTGAACTC
TGCTTGCATTGCCCCCCTGCTCCTTTGTGTGCCCCCTGCAGCCTCTGTAG
CTGCGGTTACATCCCTGCTTGTTGTCTGAGAAGGGTGGGTGCTATTACGT
AGCTGATAGAATTTTTTTCTTAAGTCAGGAGGTAGGATTGTGTAGGGCAG
GGACTGAGCAAGTATGTTATCAGTGACGATGCTCAGACGTGCCCTAACCC
AGGGCCGATGTGAGCCCGGGCCATGTCGCACGTGCTCTCTGCCCGTGCAG
TCACAGTGTCATTTCCCAGGGTCTTGACTCTTTGCAAGCTTGCTGACTTC
TTGAGACGCTTGTCAGCGTTGCTTACTTACTTGTTTTTAATTAACCCTTT
TAGACATCTGCCACATGTATCACATTCCTCGCCCCTTATCTTTACATATT
CTCTCTCTTCCTTACCCCCCCAGTTGCTTTCAGCTCATGCTCTGCTTTTG
TCTTGCTCTGCCTTGTACCCAAACCCCCCCCTTTCCTTTTCGCCTTCTCT
ATTCCCCTCTTTCCCTTTTATCTCCCCTTCCTCTTCTTTCCCTTTATCCT
C
ACCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTATATAGNTTAGACTGGCCT
CAGGGCTCCCCAAGGCTAATATTACATACATGGCCTCAGATACCATTTTT
TAACTTTAGGATTGCATACATGAGATAGATAAGTAGAACAGATTGATAAA
TGACAGAGAGGTGTGTGGACAAACAAGTAGATGAGTGAATAGATAGAAAG
ACAGAAGGTTGAATGGACAGATGGATAAGTAGGCATTTGGATGGATAGAT
GGATAAATAGCTGTTTGGAATGATTTTTATGTAGATTGATGTATTATTGG
GTGGATAAGTTCAGTATAACCACCCCTCTTCAGCGGAACGTCGCACATGT
TGCCACGATTTTCCGTGTTCCACCCAGACATCATTCTGTTCCTGGCTATT
TTTTCCCTTTGTTGTCCGTATCATTTTTCCTGCCTCCTTCTTTTCCCCCA
TCCTTCTCGACTTCCCCTTGTCCTCTTTATTTCCCTATGTCTTCACTCCC
TCACCCCCCTTTTTTTTCCTCTTCCCTTATTTCACTTCCCCTTTTCTCTT
TTGCCCTTTTTCTCTTCGTCTTTCTTTCTTTCCCTCCTCCTCCTTCCCCA
CCCCTCTTCCCTCCTATTTTCCCCCCCTTCTTTCCCTTTTCCTCCATTCT
TCCACTCCCCTCCTTCTTTCCCCTCTGGCCTTTCTATCCTCCCGTCCCGT
TCTCTCTCACCCTCTACCTTTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no424_k11.b1 MSMg01no424_k11.b1 CHROMAT_FILE:
MSMg01no424_k11.b1 PHD_FILE: MSMg01no424_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:45:40 2005
         (244 letters)



>mm_chr17_15044196_15044839
          Length = 644

 Score =  300 bits (155), Expect = 6e-86
 Identities = 218/263 (82%), Gaps = 39/263 (14%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgcctgcgctgccttccagattcaaggaggcacagtctaggatgacagcttatgctgtg 60
           |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 355 ttgcctgcgctgcctttcagattcaaggaggcgcagtctaggatgacagcttatgctgtg 296

                                                                       
Query: 61  gtgagtggaagatggctgatgaggagagtattgcagctctgaaagtgtcatccacttctt 120
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 295 gtgagtggaagatggctgatgaggagagtattgcagctctgaatgggtcatccacttctt 236

                                                                       
Query: 121 gggaaacctgaactctgcttgcattgcccccctgctcctttgtgtgccccctgcagcctc 180
           |||||||||||||||||||||||||||                   ||||||||||||||
Sbjct: 235 gggaaacctgaactctgcttgcattgc-------------------ccccctgcagcctc 195

                                                                       
Query: 181 tgtagctgcggtt-------------------acatccctgcttgttgtctgagaagggt 221
           || ||||||||||                   |||||||||| ||| |||||||||||||
Sbjct: 194 tgcagctgcggttagggtggaggcggatgtaaacatccctgc-tgtcgtctgagaagggt 136

                                  
Query: 222 gggtgctattacgtagctgatag 244
           |||||||||||||||||||||||
Sbjct: 135 gggtgctattacgtagctgatag 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)