BAC Information

Click to search

BAC

Clone NameMSMg01-425A14
Chromosome17 (Build37)
Map Location 76,509,622 - 76,510,283
singlet/doubletsinglet
Overlap genenone
Upstream geneLtbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885
Downstream geneLOC100043886, EG624348
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425A14.T7 (MSMg01no425_a14.b1)MSMg01-425A14.TJ (MSMg01no425_a14.g1)
ACCAG518815AG518816
length749749
length of high quality
(start - end)
669 (32 - 700)577 (66 - 642)
definitionCHROMAT_FILE: MSMg01no425_a14.b1 PHD_FILE: MSMg01no425_a14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:08 2005CHROMAT_FILE: MSMg01no425_a14.g1 PHD_FILE: MSMg01no425_a14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTAAACGACTCACTATATTGCGAGGATCCGCGGAATTCCCTTAT
GTTCTCTAAATCAGGCCTGCAAGCTCACTTGGCTGTCTTTCTGTCTTGAT
AATAGAAGACCCCAGCATGCTGAGAATAAAACACTATTTACATTTACATA
CTGTTTGAAACCAGGGTATCATTATTCAACAAATCATTGACCCTTACAAC
TTTAAATGTCCTTTGCTTCTTTATATAATTACTCTGATACAAAGTAGAGA
AGAAAGCCAAAGTTAAGCTCCTCTTAAGTTCTTATAATTAAGAGTACACC
TACAATCAACTAGAAGGCAGAGAGAAATGCTGCCATAGTCAAAAAACAGG
AACTGGAAATAAGTTCCTGATTATTAGAAATCAGGCGTTCTGCCAGTCTG
CTTTCTAGTAACTCAGTTCCAGCAACTTACTTCATCCCTTGCTGTCACCC
ATTTTCACCATCCCTAAGAGTTGCATATTTTCCTATGAGATACAGGTACC
CTTTAAAGTGTCTGGACATCTACAGCAGACACTCACAAAGCAAGGTCCTT
GAAGAGGGATGTTGGCAAAGACAAAGGCTACAAACCTTCCAACTACTAGC
ATTGCCTGGGGTCACTGGAGCTCTTGGTCCCAGGGTCAGTAGTCCACAGT
GTCTGAAGGACGTTGGTGGCTTATTATAACACTAACATGCATACTCCTAG
GTAGAGGTGAAATGTCAATGAAACATTGGATGCATGAAACTCTATGTGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCTTCATCAGCATTTGTTATTATTTGCTGTCATG
ATGAGAAACCCTTTAAGTTGGATGAGAAATACCCTGTGACCAAGTTGGTG
TAAAAAGCCAAGTCACAAAGTTCAATTCAGCACATGAAGAGACAGAGAAA
TTAGATGGTAAGTTCAATCAATGCCAAGCAGTCGTGTGACAAAGCCTGTT
TAGAAAAGTTTGGGCGATCCTGGAGTTACATATGTAGAAGAGTTAAATTG
TCCTCATCTCCCATCACCTCACTGTACAAAAGTCAATTCATAATATATCA
AATACCTGAACGTTGACTGTTTATTTGAAGTTCCTAGAAGGAAACATAAG
CAAATCAGTTCAAGATTAGGATAAGCAAAGATTTTCTGAAAAAAATACTC
TAATCTCATGGGAAACGATTCCAAGAATTAACCAATGAGATTTAAAAGCT
TCTGCAGCAGGACACAGCAGCCATCGTAGTAAAGGGCCAACCAACAGAAC
AGGAGTAGACTGGCCAGCTACTGTGATGGCTGATGTTGGTTGTCAACTTG
ACTGGATCTGAAATCAACTAAATGACGTACTAGAACTAAATGTGGTTTAA
CCCACCCTACCCCACCCCCGCCAAAAAAAGTAAGATAGGGTTAATAGTAA
AGGATTAATCATGTTATAGTTGAATTAATCTACTACATTCCGAGCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_a14.b1 MSMg01no425_a14.b1 CHROMAT_FILE:
MSMg01no425_a14.b1 PHD_FILE: MSMg01no425_a14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:08 2005
         (669 letters)



>mm_chr17_76509255_76510323
          Length = 1069

 Score = 1257 bits (650), Expect = 0.0
 Identities = 659/662 (99%)
 Strand = Plus / Minus

                                                                        
Query: 8    gaattcccttatgttctctaaatcaggcctgcaagctcacttggctgtctttctgtcttg 67
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 gaattcccttatgtactttaaatcaggcctgcaagctcacttggctgtctttctgtcttg 970

                                                                        
Query: 68   ataatagaagaccccagcatgctgagaataaaacactatttacatttacatactgtttga 127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  ataatagaagaccccagcatgctgagaataaaacactatttacatttacatactgtttga 910

                                                                        
Query: 128  aaccagggtatcattattcaacaaatcattgacccttacaactttaaatgtcctttgctt 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909  aaccagggtatcattattcaacaaatcattgacccttacaactttaaatgtcctttgctt 850

                                                                        
Query: 188  ctttatataattactctgatacaaagtagagaagaaagccaaagttaagctcctcttaag 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  ctttatataattactctgatacaaagtagagaagaaagccaaagttaagctcctcttaag 790

                                                                        
Query: 248  ttcttataattaagagtacacctacaatcaactagaaggcagagagaaatgctgccatag 307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789  ttcttataattaagagtacacctacaatcaactagaaggcagagagaaatgctgccatag 730

                                                                        
Query: 308  tcaaaaaacaggaactggaaataagttcctgattattagaaatcaggcgttctgccagtc 367
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729  tcaaaaaacaggaactggaaataagttcctgattattagaaatcaggcgttctgccagtc 670

                                                                        
Query: 368  tgctttctagtaactcagttccagcaacttacttcatcccttgctgtcacccattttcac 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669  tgctttctagtaactcagttccagcaacttacttcatcccttgctgtcacccattttcac 610

                                                                        
Query: 428  catccctaagagttgcatattttcctatgagatacaggtaccctttaaagtgtctggaca 487
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  catccctaagagttgcatattttcctatgagatacaggtaccctttaaagtgtctggaca 550

                                                                        
Query: 488  tctacagcagacactcacaaagcaaggtccttgaagagggatgttggcaaagacaaaggc 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549  tctacagcagacactcacaaagcaaggtccttgaagagggatgttggcaaagacaaaggc 490

                                                                        
Query: 548  tacaaaccttccaactactagcattgcctggggtcactggagctcttggtcccagggtca 607
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 489  tacaaaccttccaactactagcattgcctggggtcactggagctcttggtgccagggtca 430

                                                                        
Query: 608  gtagtccacagtgtctgaaggacgttggtggcttattataacactaacatgcatactcct 667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429  gtagtccacagtgtctgaaggacgttggtggcttattataacactaacatgcatactcct 370

              
Query: 668  ag 669
            ||
Sbjct: 369  ag 368


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)