BAC Information

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BAC

Clone NameMSMg01-425C21
Chromosome17 (Build37)
Map Location 59,325,329 - 59,467,534
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425C21.T7 (MSMg01no425_c21.b1)MSMg01-425C21.TJ (MSMg01no425_c21.g1)
ACCAG518923AG518924
length766769
length of high quality
(start - end)		518 (37 - 554)416 (65 - 480)
definitionCHROMAT_FILE: MSMg01no425_c21.b1 PHD_FILE: MSMg01no425_c21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:19 2005CHROMAT_FILE: MSMg01no425_c21.g1 PHD_FILE: MSMg01no425_c21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,325,329 - 59,325,842)(59,467,119 - 59,467,534)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTT
GAATCCATTCTCTTCCTCTTCTTACATTTCATCTTTATTTCTGTTTCAGA
ACCTTCAAATTCATGGGAGGTTGTTAAGAAGATGGCAAAGTGCAACAGAC
AGGGAATTCTGACAGAAACTGAATGATCAGCAGGTGGGTTTGACTAGATC
AAATGGAAAACTTTCCTTACCTTGTTCTTTGTGAGTTCTGTCTTAGGATT
TTCACTTCCTTCTGAAATTTGCCTTGCTCTGTATGTCCCACGTAGTGGAA
TCATCTTCTCTTGTACTTTGGTGCCATATTTCTCCTGTGGGGAAGCATAA
GCCGGTGTGGGCCAGATCTCCTTCCATCCACTTCTAAACAAGTATCCAAG
GAAGGTGAGATTTGTAGTTTGTTCTGCAAAGTATTCTATCTTGGCTACTT
CTCTCCACATTCTTAGCTGACTGAGAAAAAGTATGATAAAATGAGACCAA
GTTTATAAAATAGACGCGTATGTGTGTGTGCGTGTGTGTATGTGTGTGTG
TTTCTTTCTCACAGACAAATGTACCTCAAATACATTCCACTTCTAGTGTG
TTTCGACATTTTGAGAAGATGGTCAGTGCATCTACCTATGTTTACAGCTG
GTTAGGGAAGCTCGGAATATCAGATTTCCCTCGGAAAAACAAGTCTCTGG
GATAAATGAACCTAGGGGCGGAAGGCTTAGGACTCCCGTGAAAGCCATTC
TTGGCCCCACCCTGGC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTAGGTCATTTGTGTATGCACACCAAAGACAGTGA
ATGAAATGGCCAAGGTTTAACAGGAATCAATTGCTTTTCATCTACTCCTT
ACAATGGTACTGTGAGCTATAAATACTCCTCATGCATTTTTCTTTTGTTT
TCTTTCTCTCTTGTTTTGCTGCAAATAAGTAACACAAATTTTGAAATAGC
CACTTACACACATGCACACACCACACAAATACTGAAAGAGACCAAGCAGA
GCAGCAAGGGAATGAAACGGGTGCCTAAAATCTATAATTCAGAACGGAAG
TTTTTCCCCTTGGATAATTAGAAACAGAATCTATTTGTGCACCTTGTTTT
TTTCAATCCCCAATGTGTTCGACTAAAATGGTAATTAGCCGTGTTTCCAT
TTTGTTTGAGACATACTTTATATCATGTGTAGTGCAGTCCCAGTCTCATG
NNGAAAATGAATAATCAGGAGAATATTTTTCAATGTCTCTTCTCTGTAAG
ATTTACTGAGTTGTCTGTNATGTGGACTGACAGGGCCTGCTTTAAATTAT
AAAAAAGTAAACATCAGTGTTTGCAAATACAAAAAAACAATCCCCCCTCA
TTTTCCTTTTCCAAAAAAAAACCAACCCCAACCTTTTAAATTTTAATAAA
AAAGGGGATTTCTTAAGGACAAAAAAAAAAAAATTTTTCCTTTTTATAAA
AAAAAAAATCCCCAAGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_c21.b1 MSMg01no425_c21.b1 CHROMAT_FILE:
MSMg01no425_c21.b1 PHD_FILE: MSMg01no425_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:19 2005
         (518 letters)



>mm_chr17_59325125_59326042
          Length = 918

 Score =  932 bits (482), Expect = 0.0
 Identities = 506/514 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttgaatccattctcttcctcttcttacatttcatctttatttctgtttcaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttgaatccattctcttcctcttcttacatttcatctttatttctgtttcaga 264

                                                                       
Query: 65  accttcaaattcatgggaggttgttaagaagatggcaaagtgcaacagacagggaattct 124
           ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 accttcaaatttatgggaggttgttaagaagatggcaaagtgccacagacagggaattct 324

                                                                       
Query: 125 gacagaaactgaatgatcagcaggtgggtttgactagatcaaatggaaaactttccttac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacagaaactgaatgatcagcaggtgggtttgactagatcaaatggaaaactttccttac 384

                                                                       
Query: 185 cttgttctttgtgagttctgtcttaggattttcacttccttctgaaatttgccttgctct 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttgatctttgtgagttctgtcttaggattttcacttccttctgaaatttgccttgctct 444

                                                                       
Query: 245 gtatgtcccacgtagtggaatcatcttctcttgtactttggtgccatatttctcctgtgg 304
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtatgtcccacgtagtgggatcatcttctcttgtactttggtgccatatttctcctgtgg 504

                                                                       
Query: 305 ggaagcataagccggtgtgggccagatctccttccatccacttctaaacaagtatccaag 364
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggaagcataagccagtgtgggccagatctccttccatccacttctaaacaagtatccaag 564

                                                                       
Query: 365 gaaggtgagatttgtagtttgttctgcaaagtattctatcttggctacttctctccacat 424
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 gaaggtgagatttgtagtttgttctgcaaagtattctatcttggttacttctctccacat 624

                                                                       
Query: 425 tcttagctgactgagaaaaagtatgataaaatgagaccaagtttataaaatagacgcgta 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 625 tcttagctgactgagaaaaagtatgataaaatgagaccaagtttataaaatagacgcgcg 684

                                             
Query: 485 tgtgtgtgtgcgtgtgtgtatgtgtgtgtgtttc 518
           ||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtgtgtgtgcgtgtgtgtatgtgtgtgtgtttc 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no425_c21.g1 MSMg01no425_c21.g1 CHROMAT_FILE:
MSMg01no425_c21.g1 PHD_FILE: MSMg01no425_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:19 2005
         (416 letters)



>mm_chr17_59466919_59467734
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttaggtcatttgtgtatgcacaccaaagacagtgaatgaaatggccaaggtttaacagg 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttagctcatttgtgtatgcacaccaaagacagtgaatgaaatggccaaggtttaacagg 557

                                                                       
Query: 61  aatcaattgcttttcatctactccttacaatggtactgtgagctataaatactcctcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aatcaattgcttttcatctactccttacaatggtactgtgagctataaatactcctcatg 497

                                                                       
Query: 121 catttttcttttgttttctttctctcttgttttgctgcaaataagtaacacaaattttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 catttttcttttgttttctttctctcttgttttgctgcaaataagtaacacaaattttga 437

                                                                       
Query: 181 aatagccacttacacacatgcacacaccacacaaatactgaaagagaccaagcagagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatagccacttacacacatgcacacaccacacaaatactgaaagagaccaagcagagcag 377

                                                                       
Query: 241 caagggaatgaaacgggtgcctaaaatctataattcagaacggaagtttttccccttgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caagggaatgaaacgggtgcctaaaatctataattcagaacggaagtttttccccttgga 317

                                                                       
Query: 301 taattagaaacagaatctatttgtgcaccttgtttttttcaatccccaatgtgttcgact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taattagaaacagaatctatttgtgcaccttgtttttttcaatccccaatgtgttcgact 257

                                                                   
Query: 361 aaaatggtaattagccgtgtttccattttgtttgagacatactttatatcatgtgt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaaatggtaattagccgtgtttccattttgtttgagacatactttatatcatgtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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