XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTC
TCATGGTTTTGCATATACCAACTCATCATAATAACTTCAACAGTGAGTCA
AGTTACTCTTTCTCCATTTAACTGGAAACAAAACAAAACTAAAGACCAGA
AGAAATGTTGTAAGATTCAAAGCATGCAGGTGAACAAGAATACTTCCAAG
TCCCTGTTCACAGAATTCCCAAAGCTGAAATATTTTTCCATCAAGAGTAA
CTGCCAGTAAATATGTTTAGCTCTGTAGGCTATGAAGTCTTCATTGTGGG
GAATCCGATTGAATCACAAAAGGAGGCTCAAGCAGGAAGATGAATGTGGA
TGGGTAAGACAGTGTTTCACTAAGACTTTTTTTTATTAGATATTTTCTTC
ATTTACATTTCAAATGCTATCCCAAAAGTCCCCTATACCGTCCCCCCACC
CTGCTCCACAACCCACCCTCTCCTGCTTCTTGGCCCTGACATTCTCCTTT
ACTGGAGCATATAATCTTCGCAAGACCAAGGGCCTCTCCTCCTATTGATG
GCCAACTAGGCCATCCTCTGCTACATATGCAGCTAGAGACACAGCTCTGG
GGGTACTGGGTAGTTCATATTGGTGCTCCTCCCATAGGGTTGCAGATCCC
CTCAGCTCCCTTGGGACTTTCTCTACCCCCCTCTTTAAGGGGCCCGTGTT
CCATCCATAAAAGAATGTGAACATTCCCTTCCTGTTTTGTCAGTCCTGGG
CATAGCCTCCCCAAAAAAAG

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTGGTAAATTATGACTATCACTTGATTT
ACAAAAAGATCATATTGCTATCGGCTCATTCAGGAATTTATCTGTGACTG
AATACTAAGTAGCATAGAACTGGGAGAAAGTTAGCTGTTTATTTAGGTGT
GGCTTTTCTCTTAAAAGGCTCATTTCATTATATCTTTTTTGGGGGTGTGT
GCATGTTGTACACAGGCATGCGGGTGCCTGTGAAGGTGAGATGTGTCTGA
TGGGCTGGAGCTGGAGATATATATATATATATATATATATATATATATAG
GCACGTGGGATTTGCCCTAAGCGAGTGCAGACAACAGAACGCTAGTCCTT
TATGAGAGCAGGAACGGCTCTTACCTGCTCAGCCATTCTCTCTACCCCTG
CTGTCGTTTTTTATACTCCCAAGTTCTTCGTTATGACTGTCCAACGAGGT
ACCTAGCCTCCTTGACTTTTTTTTTCTTGATGTTCACATCCGCTGTTGCG
CCCCCTATGCCCCCTTTTCTTTTTTTCTTGTTTTGTTCCTCGATTTTCTT
CTTTTTTTCGCTTTTCTCTCCTTTCTTTTCTTCTCTTCTTTTTTTCCCTC
CTTTTTCGCGCTCTTTTCTTCTTTTTTTCTCCCCTTCCTTTTTTCTTTCC
TTTTTTCTCTGGTGCCTTCTTTTCTGCCCTTCTTTCATTGCCTTCACTTC
CTTTCCTTCCTCTCTCTCTTCTCTTCTATCCCTTTTTGTTCCCTTTTTTT
TCT

Query= MSMg01no426_f02.b1 MSMg01no426_f02.b1 CHROMAT_FILE:
MSMg01no426_f02.b1 PHD_FILE: MSMg01no426_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:48 2005
         (579 letters)



>mm_chr17_52293710_52294688
          Length = 979

 Score = 1048 bits (542), Expect = 0.0
 Identities = 548/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattctcatggttttgcatataccaactcatcataataacttcaacagtgagtcaagt 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ggaattctcatggttttgcatataccaactcatcataataacttcaacagtgagtcaagt 491

                                                                       
Query: 76  tactctttctccatttaactggaaacaaaacaaaactaaagaccagaagaaatgttgtaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tactctttctccatttaactggaaacaaaacaaaactaaagaccagaagaaatgttgtaa 431

                                                                       
Query: 136 gattcaaagcatgcaggtgaacaagaatacttccaagtccctgttcacagaattcccaaa 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gattcaaagcatgcaggtgaacaagaatacttccaagtccctgttcacagaattcccaaa 371

                                                                       
Query: 196 gctgaaatatttttccatcaagagtaactgccagtaaatatgtttagctctgtaggctat 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gctgaaatatttttccatcaagagtaactgccagtaaatatgtttagctctgtaggctat 311

                                                                       
Query: 256 gaagtcttcattgtggggaatccgattgaatcacaaaaggaggctcaagcaggaagatga 315
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaagtcttcattgcggggaatctgattgaatcacaaaaggaggctcaagcaggaagatga 251

                                                                       
Query: 316 atgtggatgggtaagacagtgtttcactaagacttttttttattagatattttcttcatt 375
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 atgtggatgggtaagacagtgtttcactaagacttttttttattagatattttcttcatt 191

                                                                       
Query: 376 tacatttcaaatgctatcccaaaagtcccctataccgtccccccaccctgctccacaacc 435
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tacatttcaaatgctatcccaaaagtcccctataccgtccccccaccctgctccacaacc 131

                                                                       
Query: 436 caccctctcctgcttcttggccctgacattctcctttactggagcatataatcttcgcaa 495
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 caccctctcctgcttcttggccctgacattctcctttactggagcatataatcttcgcaa 71

                                                                       
Query: 496 gaccaagggcctctcctcctattgatggccaactaggccatcctctgctacatatgcagc 555
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gaccaagggcctctcctcctattgatggccaactaggccatcctctgctacatatgcagc 11

                     
Query: 556 tagagacaca 565
           ||||||||||
Sbjct: 10  tagagacaca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space:   551361
Effective search space used:   551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no426_f02.g1 MSMg01no426_f02.g1 CHROMAT_FILE:
MSMg01no426_f02.g1 PHD_FILE: MSMg01no426_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:49 2005
         (207 letters)



>mm_chr17_52101122_52101728
          Length = 607

 Score =  377 bits (195), Expect = e-109
 Identities = 204/207 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctggtaaattatgactatcacttgatttacaaaaagatcatattgctatcggctcatt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttctggtaaattatgactatcacttgatttacaaaaagatcatattgctatcagctcatt 260

                                                                       
Query: 61  caggaatttatctgtgactgaatactaagtagcatagaactgggagaaagttagctgttt 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 caggaatttatctgtgactgaatactaagtagcatagaactgggagtaagttagctgttt 320

                                                                       
Query: 121 atttaggtgtggcttttctcttaaaaggctcatttcattatatcttttttgggggtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttaggtgtggcttttctcttaaaaggctcatttcattatatcttttttgggggtgtgt 380

                                      
Query: 181 gcatgttgtacacaggcatgcgggtgc 207
           |||||||||||||||| ||||||||||
Sbjct: 381 gcatgttgtacacaggaatgcgggtgc 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)