BAC Information

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BAC

Clone NameMSMg01-426K03
Chromosome17 (Build37)
Map Location 56,750,472 - 56,750,960
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik
Downstream geneRpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426K03.T7 (MSMg01no426_k03.b1)MSMg01-426K03.TJ (MSMg01no426_k03.g1)
ACCAG520026AG520027
length841768
length of high quality
(start - end)		81 (132 - 212)489 (67 - 555)
definitionCHROMAT_FILE: MSMg01no426_k03.b1 PHD_FILE: MSMg01no426_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:14 2005CHROMAT_FILE: MSMg01no426_k03.g1 PHD_FILE: MSMg01no426_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:48:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCTAAATCCGCGGAATTC
CATGTAGACCTTGCTCAAAGATTTTGAATATTTGCTCTGGCAAGACTTTT
AAATTTCTTTAAATGCATTTTTCAATTCCTCATATTCTCTCTCCCTGCCT
TTAGTTCCTACATTTGAGATCAAAGGCCTGGATTTCTTTATTCCATGTGT
ACTTAAAAACAATTAAACAATGACCAGCGACACTTCCTTCTATCCTTAGA
GCCAATACGGTTCTATCTATCTCTGTCCTTCACTTACCTGTCTGTCGGAG
GCAGGCCGTATCTGTTGTTTGTCTCTTATTAGTGTCTCTCTGCACAGCAG
GCGCTCCCAGCATCTCTGATCTCCAGCTCTTGGTGTAGATATACTTCCGT
ACTGGGAAGAAATTCTTACAGTGTGTCGTTCACAATCTTGATTCTGTTTA
TAAACCCATTCTTCCCTTCTCCTAATTCTAATTTCTTGTGTGTCCGCGTA
TTTCATTCTGAGGTATTTCTAATTAACCCTCGTATAATTCTAATATGCGT
GAATTACTCTACTCTGTCTTAGGTTCCAACTTACGCCATTTTTTCCCTCT
TCCCTAATTCTCCTCGTTATTTTGTTTTGTTTCACTTTTCCACTTTTGTC
TCTCTTTTTTATTTTTTTGTGTTGAGTATTTCTCATCTCCCTTTTTTTTT
TTTAATTAATTTCCCCTTCTCTTCCTTTATGTATTATCCTCTCGCCATCT
ATATCTTTTCTTCTTCTTTATTTCTTTATTCAACTTCCTTATATCATCCT
CCCATTTCTTTTCTTTTTAATATTTCTTTCTCCTACTTTCC

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTGCCTGGGCCTCCTCATTCCTGCTTTTACAG
ACATGTCCAGTGTCTATGGTGACATTTTCTCCTTTTCACCCAGAACTAAA
ATAAACCAACCCTCATGACTAAGAATGGGTGAGAGGAGCCTAGAACATGG
CAAGGTAGCATGTGGCATTGCCAGTAGCGCTTAGACAGTGTATCTTTGGA
CCTAAGATTTGAAAGAAGTAAGTTTTAGGGAAGAGTGTCCAAGCAAGAAC
TCAGCCAGTGCACAGGCCCAGGACCTGGGACAAAGCTGAGCAGACTGGGC
AGTTTGGACTGGCTCCTGGAGGACCCTTTAAGGGGCCCAGGGCTTTGTTT
TCCCCCCACTCCCAGAATGACCAGAGTGAGTGGTCTGAGGAAGAAGGAAG
GATGTTGGCAGCAGGACATCTTCATTATGTCCCACTAAGGCTCACACACG
GAAGGCGAGCCTCCCTGTGTGTGGGTGCAGGGCTGGGATGGGGGTAGGAA
GTGAGTGTTGTTTTTTTTTTTTTTTTTCTTCTTCCTTCTCTTCTTTTCTT
TCCCTCCTCCCCTTCTTTTTCTTCTTTCTCTTTTTCCTCGTTTTTTTTTT
TTTCTCCTCTTTCCTTGCGTTTTTCTCTTGCTATATCTTTTTTATTACTA
TTTACTTACTTTCCCCTTTATTTTCTCTTTCTCTTTTCTTCTTTCATTGT
TTATAGATTATTTCTGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_k03.g1 MSMg01no426_k03.g1 CHROMAT_FILE:
MSMg01no426_k03.g1 PHD_FILE: MSMg01no426_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:14 2005
         (489 letters)



>mm_chr17_56750272_56751160
          Length = 889

 Score =  938 bits (485), Expect = 0.0
 Identities = 488/489 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgcctgggcctcctcattcctgcttttacagacatgtccagtgtctatggtgacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctgcctgggcctcctcattcctgcttttacagacatgtccagtgtctatggtgacatt 260

                                                                       
Query: 61  ttctccttttcacccagaactaaaataaaccaaccctcatgactaagaatgggtgagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctccttttcacccagaactaaaataaaccaaccctcatgactaagaatgggtgagagg 320

                                                                       
Query: 121 agcctagaacatggcaaggtagcatgtggcattgccagtagcgcttagacagtgtatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcctagaacatggcaaggtagcatgtggcattgccagtagcgcttagacagtgtatctt 380

                                                                       
Query: 181 tggacctaagatttgaaagaagtaagttttagggaagagtgtccaagcaagaactcagcc 240
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 tggacctaagatttgaaagaagtaagttttagggaagagcgtccaagcaagaactcagcc 440

                                                                       
Query: 241 agtgcacaggcccaggacctgggacaaagctgagcagactgggcagtttggactggctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgcacaggcccaggacctgggacaaagctgagcagactgggcagtttggactggctcc 500

                                                                       
Query: 301 tggaggaccctttaaggggcccagggctttgttttccccccactcccagaatgaccagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaggaccctttaaggggcccagggctttgttttccccccactcccagaatgaccagag 560

                                                                       
Query: 361 tgagtggtctgaggaagaaggaaggatgttggcagcaggacatcttcattatgtcccact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtggtctgaggaagaaggaaggatgttggcagcaggacatcttcattatgtcccact 620

                                                                       
Query: 421 aaggctcacacacggaaggcgagcctccctgtgtgtgggtgcagggctgggatgggggta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaggctcacacacggaaggcgagcctccctgtgtgtgggtgcagggctgggatgggggta 680

                    
Query: 481 ggaagtgag 489
           |||||||||
Sbjct: 681 ggaagtgag 689


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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