Query= MSMg01no426_k11.b1 MSMg01no426_k11.b1 CHROMAT_FILE:
MSMg01no426_k11.b1 PHD_FILE: MSMg01no426_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:16 2005
(415 letters)
>mm_chr17_72175556_72176370
Length = 815
Score = 746 bits (386), Expect = 0.0
Identities = 406/416 (97%), Gaps = 8/416 (1%)
Strand = Plus / Plus
Query: 4 ggaattctgtcca----tgtctctcctccctttcaagtccagggcaagactcacactcca 59
||||||||||||| ||| | |||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtccacacctgt---t-ctccctttcaagtccagggcaagactcacactcca 259
Query: 60 caggatgtctccatctatcccctaactggaggcttgcagccccttcttcctctccattcc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caggatgtctccatctatcccctaactggaggcttgcagccccttcttcctctccattcc 319
Query: 120 ctagtctcctcttctgcagaactaggcttgatctcagagcctagcagtgctaggcaagcg 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 ctagtctcctcttctgcagaactaggcttgacctcagagcctagcagtgctaggcaagcg 379
Query: 180 ctgtccaggctctgtcaccctctgaagtgtctgctacccatgtgtcctgcttgcctcccc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgtccaggctctgtcaccctctgaagtgtctgctacccatgtgtcctgcttgcctcccc 439
Query: 240 tgaatcctggaggactctttccctgccaggctacccacaggctgtgtcttcttatgagat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgaatcctggaggactctttccctgccaggctacccacaggctgtgtcttcttatgagat 499
Query: 300 ttttcttttgactttccagaatccccactcacttcctcctcctagacctcctgctttggg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttttcttttgactttccagaatccccactcacttcctcctcctagacctcctgctttggg 559
Query: 360 aaggagattgggcccactccagctccgactcagagtgcatcttgatgagccgctgg 415
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 560 aaggagattgggcccactccagctctgactcagagtgcatcttgatgagccgctgg 615
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_k11.g1 MSMg01no426_k11.g1 CHROMAT_FILE:
MSMg01no426_k11.g1 PHD_FILE: MSMg01no426_k11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:16 2005
(478 letters)
>mm_chr17_72362660_72363532
Length = 873
Score = 777 bits (402), Expect = 0.0
Identities = 451/470 (95%), Gaps = 7/470 (1%)
Strand = Plus / Minus
Query: 3 gacattctaacgggactcttccaaactcaggagctatagaggacccctggaatagactat 62
||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct: 666 gacattctaacaggactcttccaagctcaggagctatggaggacccctggaatagactat 607
Query: 63 gt-ccctccgtgtccctagtgacaagtctagtgaggactattttcaagcaaatcacagag 121
|| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 606 gtcccctccatgtccctagtgacaagtttagtgaggactattttcaagcaaatcacagag 547
Query: 122 ggtgtgcgtgtgcctgcatgagtgtgtgcatgtgtgagcacacacccacaagtgtgcatg 181
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 ggtgtgcatgtgcctgcatgagtgtgtgcatgtgtgagcacacacccacaagtgtgcatg 487
Query: 182 tgtgtttgtacctgtaacttcgctgtaaacatcccttgcccctctatcgtcatccttccc 241
||||||||||||| || ||||||| |||| ||||||||||||||||||||||||||
Sbjct: 486 tgtgtttgtacct-----tt-gctgtaagcatctcttgcccctctatcgtcatccttccc 433
Query: 242 aaagccattaactcatcggaagccaggaaacttgtaactaaggagacaaaagaggaaact 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaagccattaactcatcggaagccaggaaacttgtaactaaggagacaaaagaggaaact 373
Query: 302 atggtagaactctgctaatgcagagctgcagaagttgagttcattggtttaagtatccaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 372 atggtagaactctgctaatgcagagctgcagaagttgagttcattggtttaagtacccaa 313
Query: 362 gggggaagacggtgggcccaggaataaaaacaaattctaaccatagagaggctataagaa 421
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 312 gggggaagacggtgggcccagggataaaaacaaattccaaccatagagaggctataagaa 253
Query: 422 agtaataatgtgggcaggtccctcatcttaaacagggtcaaagactgcag 471
||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agtaaaaatgtgggcaggtccctcatcttaaacagggtcaaagactgcag 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 873
Length adjustment: 10
Effective length of query: 468
Effective length of database: 863
Effective search space: 403884
Effective search space used: 403884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
