Query= MSMg01no426_m19.b1 MSMg01no426_m19.b1 CHROMAT_FILE:
MSMg01no426_m19.b1 PHD_FILE: MSMg01no426_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:28 2005
(307 letters)
>mm_chr17_83974450_83975157
Length = 708
Score = 518 bits (268), Expect = e-151
Identities = 298/308 (96%), Gaps = 1/308 (0%)
Strand = Plus / Plus
Query: 1 tggcagggtgatttattgaaattattcttactccaaaatcaaaattgaaatacatagaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggcagggtgatttattgaaattattcttactccaaaatcaaaattgaaatacatagaat 260
Query: 61 taaatgattatttttttaagcttaaaagctgaactatcatgttacagatggacaaacgta 120
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct: 261 taaatgattatttttttaagcttaaaagctgaactaccatgttacagatggccaaacgta 320
Query: 121 taaagtactttatttagtgcagacagacacacactttacccttacatacataattcaact 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagcactttatttagtgcagacagacacacactttacccttacatacataattcaact 380
Query: 181 agaacatgattctttttatatagattacaaaatttttaaaaa-tctgtataatgcaaact 239
|||||| ||||| | |||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 381 agaacacgattcataacatatagattacaaattttttaaaaaatctgtataatgcaaact 440
Query: 240 ttgcagaagtagatctagtctttactttcaagttagaaaaggcctgacgggttctctttg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcagaagtagatctagtctttactttcaagttagaaaaggcctgacgggttctctttg 500
Query: 300 ggcatttc 307
||||||||
Sbjct: 501 ggcatttc 508
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 708
Length adjustment: 9
Effective length of query: 298
Effective length of database: 699
Effective search space: 208302
Effective search space used: 208302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no426_m19.g1 MSMg01no426_m19.g1 CHROMAT_FILE:
MSMg01no426_m19.g1 PHD_FILE: MSMg01no426_m19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:28 2005
(440 letters)
>mm_chr17_84131630_84132469
Length = 840
Score = 764 bits (395), Expect = 0.0
Identities = 424/439 (96%), Gaps = 10/439 (2%)
Strand = Plus / Minus
Query: 5 ctgttggtggctcagtttctgggggcctccaagggtcctaaagacttattaattatgtat 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 840 ctgttggtggctcagtttctgggggcctccaagggtcctaaagacttaataattatgtat 781
Query: 65 ccaggagaatgtgctctcaatgcaggtgcccacgagtacagtgcctacaacggccaggag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ccaggagaatgtgctctcaatgcaggtgcccacgagtacagtgcctacaacggccaggag 721
Query: 125 agggcgctggatccctgcggcttgagttacaggtctctgtgtcccaatgtggaaactgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agggcgctggatccctgcggcttgagttacaggtctctgtgtcccaatgtggaaactgaa 661
Query: 185 ctcaggtcccctgcaagagcagtgaactaaatgccgaagttacttctttaaacttaaaac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctcaggtcccctgcaagagcagtgaactaaatgccgaagttacttctttaaacttaaaac 601
Query: 245 -----aatttttggaatatgtagggtggggatgtgcacctgagtgcaggtatccctgaaa 299
|| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 aaaaaaa-----ggaatatgtagggtggggatgtgcacctgagtgcaggtatccctgaaa 546
Query: 300 atgagccaggtcccccagaggagaattacagatgctaacaagctgccaaatccggtcctc 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 atgagccaggtcccccagaggagaattacagatgctaacaagctgccaaatccggtcctt 486
Query: 360 aataacagcagtgtgtgttcttaaccttggagcctacattccggaattcattcgatccag 419
||||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct: 485 aataacagcagtgtgtgttcttaacctcggagcctacattccagaattcattcaatccag 426
Query: 420 aatttatttttgttttttg 438
|||||||||||||||||||
Sbjct: 425 aatttatttttgttttttg 407
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
