Query= MSMg01no427_a04.b1 MSMg01no427_a04.b1 CHROMAT_FILE:
MSMg01no427_a04.b1 PHD_FILE: MSMg01no427_a04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:45 2005
(659 letters)
>mm_chr17_78519947_78521005
Length = 1059
Score = 1176 bits (608), Expect = 0.0
Identities = 644/656 (98%), Gaps = 2/656 (0%)
Strand = Plus / Plus
Query: 5 gaattcaagaccattccgtgttacacctccagatgagagaacaggaaagaagcagtgaga 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaagaccattctgtgttacacctccagatgagagaacaggaaagaagcagtgaga 264
Query: 65 agaaaggaaccagaggggcagagaggaaagggaaagctggaaagggagaagaggaagggg 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 agaaaggaaccagaggggcagagaggaaagggaaggctggaaagggagaagaggaagggg 324
Query: 125 ctagagaaggaaggcaagatttaaataaatggagagatacctcatgtttatagattggga 184
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctagagaaagaaggcaagatttaaataaatggagagatacctcatgtttatagattggga 384
Query: 185 attttaaatggctgagatggcagttttcaacaaaccgatccatggcatcatttcagtctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attttaaatggctgagatggcagttttcaacaaaccgatccatggcatcatttcagtctc 444
Query: 245 tgctagagtccccgttggatttttacaggcatccagaaggtcagcccaaaagtcacatgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctagagtccccgttggatttttacaggcatccagaaggtcagcccaaaagtcacatgt 504
Query: 305 aacttcagggcactccaaacgatcttgcaaaacaaagaaaaaagacagggagtaggagca 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacttcagggcactccaaacgatcttgcaaaacaaagaaaaaagacagggagtaggagca 564
Query: 365 aggatcactgtagaacacgggcttagccttaacaagacaggggattcagacacaggacca 424
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aggatcactggagaacacgggcttagccttaacaagacaggggattcagacacaggacca 624
Query: 425 aaagatgaaagaagaacgtaagatccctttgagtttaaaaagtgggagagaccg-gaaac 483
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 625 aaagatgaaagaagaacgtaagatccctttgagtttaaaaagtgggagagac-gagaaac 683
Query: 484 ctaggaagtaagcaaaagactaaaatcatgtgaagctaaaggacacttgcgaactccagg 543
||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||
Sbjct: 684 ctaggaagtaagcaaaatactaaaatcatgtgaagctaaaggacacttgttatctccagg 743
Query: 544 gccccttggcttctgttgtttcatgaatccctagatggaggagagagactgtgacagcta 603
||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gccccgtggcttctgttgcttcatgaatccctagatggaggagagagactgtgacagcta 803
Query: 604 ttcctggctgtcaacttgactagatctggaatgaactacaatccagatatggaggg 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttcctggctgtcaacttgactagatctggaatgaactacaatccagatatggaggg 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space: 680801
Effective search space used: 680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no427_a04.g1 MSMg01no427_a04.g1 CHROMAT_FILE:
MSMg01no427_a04.g1 PHD_FILE: MSMg01no427_a04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:48:45 2005
(569 letters)
>mm_chr17_78671737_78672705
Length = 969
Score = 1029 bits (532), Expect = 0.0
Identities = 559/568 (98%), Gaps = 1/568 (0%)
Strand = Plus / Minus
Query: 1 ttttcagtcacattccatgattttatcagaaccttttttggcaggctttgctgtgaagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ttttcagtcacattccatgattttatcagaaccttttttggcaggctttgctgtgaagac 508
Query: 61 ttgttctacacaatcataaccccaaggggcgaaaattaggcttttgttgacacagtccca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ttgttctacacaatcataaccccaaggggcgaaaattaggcttttgttgacacagtccca 448
Query: 121 gacatacttcatatttcagctccttcagaaacttgtactttcccagccctttcttttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gacatacttcatatttcagctccttcagaaacttgtactttcccagccctttcttttact 388
Query: 181 ctagggttgagtttgaacagcagcagaatctatgctgggaccacttattaaagatgccat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctagggttgagtttgaacagcagcagaatctatgctgggaccacttattaaagatgccat 328
Query: 241 attaaagtattttcagttgcctcataaaatcccccctgcgtcacagtgcaacgtaactca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 attaaagtattttcagttgcctcataaaatcccccctgcgtcacagtgcaacgtaactca 268
Query: 301 gcccgagtacaaaggagagagtaataaggtatttatttacacaactacagcctgtaatat 360
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gcccgaatacaaaggagaaagtaataaggtatttatttacacaactacagcctgtaatat 208
Query: 361 tttaattcagcggttctaaaccctggctgcgcgttaaaatcacttacaaagcttttaaaa 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 207 tttaattcagcggttctaaaccctggctgcacgttaaaatcacttacaaagcttttaaaa 148
Query: 421 acaccactgtccagaaaggtacctcacgccaacgacatctgaatgcggggaagacaacgg 480
||||||||||||||||| |||||||||| |||||||||||||||||| ||||||| ||||
Sbjct: 147 acaccactgtccagaaa-gtacctcacgtcaacgacatctgaatgcgtggaagacgacgg 89
Query: 481 ggcatgtgtgtgtatttcaacagctcccaggcaatctgttgtgtcatttaggcgaagaaa 540
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 88 ggcatgtgtgtgtatttcaacagctcccaggcaatctgttgtgtcattcaggcgaagaaa 29
Query: 541 cacttccctacacgttcagcaaactgaa 568
||||||||||||| ||||||||||||||
Sbjct: 28 cacttccctacaccttcagcaaactgaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
