NNNNTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGG
ATCCGCGGAATTCCACATCTTTCTGTGTCAACTCTCCTGGCAAAAGACCA
ATTAAGGACATATTATGATGAAAAGATGGTTTTAAAAAAAATGTTTATAA
GCATCACAAAGGCAGAAGCCATCAAGATTTGAGAGGCAACTTGGACCCTG
GAAAGATAAAGTGTGCTTTCATTAGCACCAATTTCATAGTCAGCTATAGC
ATACAGACAAGTAGAAAACCTAGAGAAGTCTTAAACAGGATTAGTTCAAG
ATGAAACCATCCTGAAAATTAGAAAGAAAAAAAAAACCTTTTAACCTGAT
AAAATATAAGAGTTCATAGACCCAAGACACTGTGAGAGAATTTGTAAGCC
CTGAATAGTTGAGTGAAAATTAATAAAGCCAACAGATCAACTGGATTCAG
AACCATGCCCTGAGAACTATATAAATTATACCACTTCTCCCCAAAGCAGT
CAATGTTCTTACAGTCAGCTTGGGAAATGTCTATGGAGTTTGGCATTTTT
CAGCTTGAGGGCAAAAGTGTCTTGACACATATGATGTACCAGAGACCCTT
CCTTTAATATGTCAATTGGGTTAAATGACCTATTTTANGAAGGAGTACTT
TTCTTAACAAAACAACCGAAAATGGGGGGCTTTTTGTTTTTTAAAACTTT
TCTACCCCCAGGGGAATAAACCCCCCCAAAGGGGGAATATTCCCCCAAAC
CTCTGTGTCAAGTTCTTTGGGAAAAAAAACAGAAAAATAAAAN

NNNNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAA
TGGCAGAGAAGCACTTGAAAAAAATGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGG
CTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAA
AGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACT
CTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGG
AGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACA
GGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAT
AGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATAC
AGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAG
AATGAATTTATGAAATTCCTAGCCAAATGTATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACAGTCACAAAGAAACTCACACAATATGTAATCAC
TGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATAT
AATTTGCTNAACATATGAAACTCCAGAAGAAAGAAGACTGAAGTGTGCAC
ACTTTGCCC

Query= MSMg01no427_m19.b1 MSMg01no427_m19.b1 CHROMAT_FILE:
MSMg01no427_m19.b1 PHD_FILE: MSMg01no427_m19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:46 2005
         (463 letters)



>mm_chr17_16336159_16337024
          Length = 866

 Score =  861 bits (445), Expect = 0.0
 Identities = 456/461 (98%), Gaps = 5/461 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattc-cacatctttctgtgtcaactctcctggcaaaagaccaattaaggacatattat 65
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattcacacatctttctgtgtcaactctcctggcaaaagaccaattaaggacatattat 607

                                                                       
Query: 66  gatgaaaagatggtttt---aaaaaaaatgtttataagcatcacaaaggcagaagccatc 122
           |||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gatgaaaagatggttttttaaaaaaaaatgtttataagcatcacaaaggcagaagccatc 547

                                                                       
Query: 123 aagatttgagaggcaacttggaccctggaaagataaagtgtgctttcattagcaccaatt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagatttgagaggcaacttggaccctggaaagataaagtgtgctttcattagcaccaatt 487

                                                                       
Query: 183 tcatagtcagctatagcatacagacaagtagaaaacctagagaagtcttaaacaggatta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tcatagtcagctatagcatacagacaagtagaaaacctagagaagtcttaaacaggatta 427

                                                                       
Query: 243 gttcaagatgaaaccatcctgaaaattagaaagaaaaaaaaaaccttttaacctgataaa 302
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 426 gttcaagatgaaaccatcctgaaaattagaaagaaaaaaaaa-ccttttaacctgataaa 368

                                                                       
Query: 303 atataagagttcatagacccaagacactgtgagagaatttgtaagccctgaatagttgag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atataagagttcatagacccaagacactgtgagagaatttgtaagccctgaatagttgag 308

                                                                       
Query: 363 tgaaaattaataaagccaacagatcaactggattcagaaccatgccctgagaactatata 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgaaaattaataaagccaacagatcaactggattcagaaccatgccctgagaactatata 248

                                                    
Query: 423 aattataccacttctccccaaagcagtcaatgttcttacag 463
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aattataccacttctccccaaagcagtcaatgttcttacag 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 866
Length adjustment: 10
Effective length of query: 453
Effective length of database: 856
Effective search space:   387768
Effective search space used:   387768
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)