BAC Information

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BAC

Clone NameMSMg01-428C17
Chromosome17 (Build37)
Map Location 61,424,391 - 61,424,800
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043549
Downstream geneLOC433129, EG620725, LOC100043560
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428C17.T7 (MSMg01no428_c17.b1)MSMg01-428C17.TJ (MSMg01no428_c17.g1)
ACCAG521197AG521198
length764764
length of high quality
(start - end)
414 (44 - 457)259 (323 - 581)
definitionCHROMAT_FILE: MSMg01no428_c17.b1 PHD_FILE: MSMg01no428_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:16 2005CHROMAT_FILE: MSMg01no428_c17.g1 PHD_FILE: MSMg01no428_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTGTTTTCTGTGAAAGTTGTCCAATACTGAAGTTCACAAAGTTGT
AATTTTATCTAAACTTATATTCACATTGTTCACAGATCAAGTCATCTTAT
TCATTTAAATATTAGATCCACTCCCTTGAATCCTCTGATTATAATAAGAT
TGAATACTTAGTATTTGACATTAAGTACCAATTCATTTTATTATAAAGTC
ACTGCTTTAGATTATCCGTATAGTGATTAAAATTTAACTCCTTTTATAAT
TTAGCCAGGGAGAATTTGTTTAATCAGTAGTAATAATTTTAAGTGACAGT
ATTTGACAAGTAGTCTTTTTCTATTTTCAATTAATCTGTAATATAGATGG
CCTGATATTATGAATATTCAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGCGTCTCTTCTCTCCTTCTTCCTTTCCACTTTTCTCCCTT
TCTCCCCCTCTTCCCCTCCTTTTTCTTCTCTCCCTCTTCCTTTTTCCCTT
ATCCCTCCTTCCCTTCCTCTTTTCTTTTCTCTTTACCTTTTTCCTTTTTT
TTCCCCCTTCTTTTTTTTCCTCCCCCCTTCTTCCTCTATCTTTCTTTTAT
TTTTCTTATTTCCCCCTTTTCTTCCCCCTTCTTTTCCTCTTTTTTTTTTC
CCTCCTTTTTTCTCTTCTCCTTTTTCCCCTTCCTTCCTTTTTTTTTTTTC
CCCCTTTTTTTTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGCCACCGACTGGCCTCAGTTGGCCCCCC
TCAATCCGTGGGAGAAAATCGGGGTTTCAGACAGGTGGACAAGGAGTTGG
TGACAAACAAATATGGACACAGGGAGTGCTATATCTGGATGTATTTTTGT
CAAAGTAATCATTGGTCTTTTATATTACAGGAAACAAAGAAATTAAGTGA
TACATTAAGGCCATTTAAGGTACATTGAAGCTATCTGATGCAAAATTCTT
TTTACAACAAAACTTATTTTTGTGTACTTAAAAGGTAACAGGAGCCAACT
GGGATAAAAATCAATGTTAATTAACAATTGGGATCAAAAGCAGCCCCACC
TAAGGTCAGCTTAATCTTAGAAGTCAGGGACAAGGGCCTCACTTGCCATA
GTTCCAATTCTAGTCTATTGTATAGTCGACCTTCCCCCTAGGCCATTATA
AATTCTTGTGTATGGGCGTAACTCAGATATCTATAGTTCTAAGTATTTAC
AGTAGTTCCTTCTTAGACCACAACCTTCCTTCTTCCTAAGTAATTGTAAA
TTGCTGCATATGGGAGTAGCTCGGCTATTATTCTAAGTGACTGTGTGGGT
TATCTTTCTACTAACAAGTATTGTATTTTGTCATACATAACTGTATTGAA
GACTCTCAACATATTTTCCTCTTTATACTTCAGTTTGCCCTTGAGACGTC
TTATTTTTATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_c17.b1 MSMg01no428_c17.b1 CHROMAT_FILE:
MSMg01no428_c17.b1 PHD_FILE: MSMg01no428_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:16 2005
         (414 letters)



>mm_chr17_61424222_61425035
          Length = 814

 Score =  777 bits (402), Expect = 0.0
 Identities = 408/410 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttgttttctgtgaaagttgtccaatactgaagttcacaaagttgtaatttta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 gaattcacttgttttctgtgaaagttgtccaatactgaagttcacaaagttgtaatttta 520

                                                                       
Query: 65  tctaaacttatattcacattgttcacagatcaagtcatcttattcatttaaatattagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tctaaacttatattcacattgttcacagatcaagtcatcttattcatttaaatattagat 460

                                                                       
Query: 125 ccactcccttgaatcctctgattataataagattgaatacttagtatttgacattaagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ccactcccttgaatcctctgattataataagattgaatacttagtatttgacattaagta 400

                                                                       
Query: 185 ccaattcattttattataaagtcactgctttagattatccgtatagtgattaaaatttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ccaattcattttattataaagtcactgctttagattatccgtatagtgattaaaatttaa 340

                                                                       
Query: 245 ctccttttataatttagccagggagaatttgtttaatcagtagtaataattttaagtgac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ctccttttataatttagccagggagaatttgtttaatcagtagtaataattttaagtgac 280

                                                                       
Query: 305 agtatttgacaagtagtctttttctattttcaattaatctgtaatatagatggcctgata 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 279 agtatttgacaagtagtctttttctattttcaattagtctgtaatatagatggcctgata 220

                                                             
Query: 365 ttatgaatattcaaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 414
           ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 219 ttatgaatattcaaagtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtg 170


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)