Query= MSMg01no428_n13.b1 MSMg01no428_n13.b1 CHROMAT_FILE:
MSMg01no428_n13.b1 PHD_FILE: MSMg01no428_n13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:09 2005
(470 letters)
>mm_chr17_28529268_28530137
Length = 870
Score = 694 bits (359), Expect = 0.0
Identities = 420/469 (89%), Gaps = 45/469 (9%)
Strand = Plus / Minus
Query: 1 gtgagttccaggacagttggggctacacagagaaaccctggtctggaagaaaacaaacca 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 760 gtgagttccaggacagttggggctacacagagaaaccct-gtctggaagaaaacaaacca 702
Query: 61 aacaaacaatcacacacacacacacacacacacacacacacacacacacacacacacaca 120
||||||||||||||||||||||||||||||||
Sbjct: 701 aacaaacaatcacacacacacacacacacaca---------------------------- 670
Query: 121 cacacacacacacacgaattgttagccaaacatagtagcaagttccagtccttcagataa 180
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ----------------aattgttagccaaacatagtagcaagttccagtccttcagataa 626
Query: 181 gaaagcaggagggttagaatttcaagaccaacctgggctgcatgaaaccctatcttagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaaagcaggagggttagaatttcaagaccaacctgggctgcatgaaaccctatcttagaa 566
Query: 241 aaaaatatatctatttctctatcactcctttctccctatcgccccttctgacaccgtgag 300
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 565 aaaaataaatctatttctctatcactcctttctccctatcgccccctctgacaccgtgag 506
Query: 301 ccggccagagcatagtttttcctttgtttgtttgggtacatatgctgctagctcctagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccggccagagcatagtttttcctttgtttgtttgggtacatatgctgctagctcctagct 446
Query: 361 aatgagccatctctctattcctctctctggctggacacctggatttgaatttctgtcttt 420
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 445 aatgagccatctctctattcctctctctgtctgtacacctggatttgaatttctgtcttt 386
Query: 421 ggtgttcctgccccccttctacccttccccccagctatggggtttgggt 469
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgttcctgccccccttctacccttccccccagctatggggtttgggt 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space: 395600
Effective search space used: 395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no428_n13.g1 MSMg01no428_n13.g1 CHROMAT_FILE:
MSMg01no428_n13.g1 PHD_FILE: MSMg01no428_n13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:09 2005
(526 letters)
>mm_chr17_28471834_28472759
Length = 926
Score = 1002 bits (518), Expect = 0.0
Identities = 524/526 (99%)
Strand = Plus / Plus
Query: 1 ttgcttttgtgtgcctgccctctctgggtcccagtctcctggtgtctgcctcctttctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcttttgtgtgcctgccctctctgggtcccagtctcctggtgtctgcctcctttctgg 260
Query: 61 gcacagcccacagtatgcaatactgtttgaccattttatcctatgccccagcactgaggt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacagcccacagtatgcaataccgtttgaccattttatcctatgccccagcactgaggt 320
Query: 121 cccttgcaaactggttctgggatcccccttatatactgaaaggctggatgcccaggtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccttgcaaactggttctgggatcccccttatatactgaaaggctggatgcccaggtcct 380
Query: 181 tcgatgactccagcagaggatcccacgcggacactgcgtgctcctcccagatgctcacaa 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tcgatgactccagcagaggatcccacgcggacactgcgtgctcctcccggatgctcacaa 440
Query: 241 ttacccgtgcctttttctatgtaaccagactcttcacagtttaggggcttcggtctggtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacccgtgcctttttctatgtaaccagactcttcacagtttaggggcttcggtctggtt 500
Query: 301 gctatgctgaacggaactgcactgaaggcgagaagcacacctggtcactgcaccccgtgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctatgctgaacggaactgcactgaaggcgagaagcacacctggtcactgcaccccgtgc 560
Query: 361 tctcaagcccctccccaggggtgctgggttacttaccaggttcatagcctgtgaaggaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcaagcccctccccaggggtgctgggttacttaccaggttcatagcctgtgaaggaga 620
Query: 421 aagggagagagcattagaggatacacctgagggctctgtgggggaggggacatgcttttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagggagagagcattagaggatacacctgagggctctgtgggggaggggacatgcttttt 680
Query: 481 ggcaacccacccccaccttgtgctctggcagtttccaaggaagcca 526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggcaacccacccccaccttgtgctctggcagtttccaaggaagcca 726
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space: 472656
Effective search space used: 472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
