Query= MSMg01no429_n23.b1 MSMg01no429_n23.b1 CHROMAT_FILE:
MSMg01no429_n23.b1 PHD_FILE: MSMg01no429_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:29 2005
(456 letters)
>mm_chr17_32536966_32537821
Length = 856
Score = 528 bits (273), Expect = e-154
Identities = 305/325 (93%), Gaps = 16/325 (4%)
Strand = Plus / Minus
Query: 5 gaattcacaccattcttgcatgcctggtacctttacctattgaaccttgctggtcccaca 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gaattcacaccaggcttgcatgcctggtacctttacctattgaaccttgctggtcccaca 250
Query: 65 ctagttatctatgtaagagaccaaggctcgttcgtatcccttcattctatctatctatct 124
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 249 ctagttatctatgtaagagaccaaggcttgttcgtatcccttcat----tctatctatct 194
Query: 125 atcatctatctatctatctatctatctatctatctatctatctatctatctatctaccta 184
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 atcatctatctatctatctatctatctatctatctatctatctatctat----------- 145
Query: 185 cctacctaactacctatctctccctttctttctccttccttccctcctctccctcccttt 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 -ctacctaactacctatctctccctttctttctccttccttccctcctctccctcccttt 86
Query: 245 tcctcctcttcctcctcctccccctcttcctcctctccatcccttcttgttttgggaata 304
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 85 tcctcctcttcctcctcctccccctcttcctcctctccatcccttcttgtttttggaata 26
Query: 305 atgtctcaaattagtagcccaaact 329
|||||||||||||||||||||||||
Sbjct: 25 atgtctcaaattagtagcccaaact 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space: 377316
Effective search space used: 377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_n23.g1 MSMg01no429_n23.g1 CHROMAT_FILE:
MSMg01no429_n23.g1 PHD_FILE: MSMg01no429_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:29 2005
(439 letters)
>mm_chr17_32389778_32390615
Length = 838
Score = 803 bits (415), Expect = 0.0
Identities = 433/439 (98%), Gaps = 1/439 (0%)
Strand = Plus / Plus
Query: 1 ttactcactacagagaactccaatgtgattcagtggtcacagcctggtgagctgattttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttactcactacagagaactccaatgtgattcagtggtcacagcctggtgagctgattttc 260
Query: 61 ttagacccaatgttgtgtccagacggaaagcaaatatgggaatgagaagagaggaggact 120
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 261 ttagacccaatgttgtgtccagacggaaagcagatatgggaatgagaggagaggaggact 320
Query: 121 tcttcactagtagttttgaacaaaactggaacacagctatcttgttggctagaaaacaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttcactagtagttttgaacaaaactggaacacagctatcttgttggctagaaaacaag 380
Query: 181 gagaatagaagagggggcagaatgacagaactggcctggaaatctactgataatcacccc 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaatagaagagggg-cagaatgacagaactggcctggaaatctactgataatcacccc 439
Query: 241 caccctctctttctactatttttcagaagccttctcaatatatgagagacaactaacaac 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 440 caccctctctttctactatttttcagaagccttctcaatatatgagagacgactaacaat 499
Query: 301 ttagggcaggcttgtgtttccaagggcagattgagccaatttttgaggcttctctgccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttagggcaggcttgtgtttccaagggcagattgagccaatttttgaggcttctctgccag 559
Query: 361 gttcccagggacactgtaaatgatgactggatgccaggactaattcaaaaacaaaaccaa 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 gttcccagggacactgtaaatgatgactggatgccaggactaattcaaaaacaaaaacaa 619
Query: 421 aaccactgattccctcaga 439
|||||||||||||||||||
Sbjct: 620 aaccactgattccctcaga 638
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 838
Length adjustment: 9
Effective length of query: 430
Effective length of database: 829
Effective search space: 356470
Effective search space used: 356470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
