BAC Information

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BAC

Clone NameMSMg01-430L23
Chromosome17 (Build37)
Map Location 4,725,407 - 4,725,616
singlet/doubletsinglet
Overlap genenone
Upstream gene4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430L23.T7 (MSMg01no430_l23.b1)MSMg01-430L23.TJ (MSMg01no430_l23.g1)
ACCAG523167AG523168
length894842
length of high quality
(start - end)
202 (55 - 256)213 (80 - 292)
definitionCHROMAT_FILE: MSMg01no430_l23.b1 PHD_FILE: MSMg01no430_l23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:45 2005CHROMAT_FILE: MSMg01no430_l23.g1 PHD_FILE: MSMg01no430_l23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTTTTTATTGGAGGCGCGAAACGACTCACTATAGTTCGAAAATCCGC
GGAATTCTTTTGTCATTTCCCTACCTCACTCAGGATGATACCCTCCAGAT
ACATTGATTTGCCCAAGAATTTCTTAAATTCATTGCTATAATAGCTGAGT
AGTACTCCATTGTATAAATGTACCACATATTTTGTATCCATTCCTCTGTT
GCGGGGCATCTGGGCTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGC
TATGAACATATTGGAGCATGTGCCCTTCTTACCAGTCGGAATATCCTCTA
GGTATATGTCCATGATATGCACTGTTTTTTTTCTTGGAATGTAAACGTCC
CATTTTCTGAATGAGCTTCTCCTCTTTCTCTTCTTTTTCTCTTTTTTTTC
CTTCCTTTCCTCTCACCAATCCTCCCAACCCCACTTTCTTCTTTTATTTC
CTATTTCTTTCTCCCTTCCTGTTCCTTTTTTATTTTCCTTTCTTTTCTTT
TTTTCATTTTTTTCCTATATTTTACTTCTTTACTCTCTGCTCTAATTCTT
AACATCTACTATCTCTTCCTGTACCTTTTTCTCTTTATTTACTCACTTCT
TATTATTTCCCTCCTTCCTCTTTTTAATTCCTCCTTCCACCCCTCTTTTA
ATCCCCACCCATTATTCCTAACCCTATTCTAATCTCCCACCCTAACTCAT
AACTGCCTACTCTTCCCCCAATATGACCACTTCTTGTCCTTTTTTCTCCC
ATCTATCCCCTCCCTTATTCTTATTTTCCCCCATACATTCTTTTAAAATC
TCCTCTTTATCCCCTTATTCCTATCCCTTCCTTATCCTTATTATTCCTCC
TCCCCCCTTTTTTCTTATCCCTACCCTTTCTTTTATGCTTTCCN
NCCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACAGCCCTGGCAAGAGGG
GGAGGAAGGAGAACCCAGCTAACCTCTCTCTGTGCAGGACTTTCATCCGA
GGCAGAGCCCAGAGGGGCTTCTCTGTAGTTCTCCTCTTTTAACTTCCTGT
AGCCAAAAGGCAGACCTAGATGGTGCTGTGGGCCTGGGAGCCTCCTGAGC
TCCCCATCTGTCCTCTACAATGTCCTTGTCCTTTCTCAGTCTCCCTACAC
TGTGACTACCTCTCAGTTATCTCTTCTCTCTTTTCTTTTACGACATGGAC
TGATAGATGCCCTTATCTCTTTTCACTTTTCTTCCTCGTGCATTGCTTGC
CTTGTTTGTCCCCGCGTTGTGTGTTCTACATCCCCCTACCTTTCCGCTTG
TACTATCCCCCCGTCTTCCACTTTGTTCCCCTTTTCATTTCTCTTGTGTT
TTTCTCCTTTCCCCCCTTTGTTTCTTTCCTCTCTCTCCTTTATTCCCTTT
TTTTTCCCCCTTTCTTTTTCTCTCTCTCCTCCTGCTGCGTTTTATCCCCC
TCTTCTTTCTTTTTCTTTTCCCCCTGTCTTACCTTCTTGTTTTCCGTCCC
CGCGACCTCGTTGGCAATTCCTTTTTCCCTTTATATATCTCCCGCGCTCC
TTTCTCTTCTCTCTTCCTGTTTCCTTGCTCTTTCCCTTTCTCCTCTTTTC
CTTCTCTCCCTTTTTTCCTCCTCCCTATCTCCCTCCTCCCTTCTTTTGTT
CCCCTCTTATATTTACCCTATTTTTTTCTCTCTCTTCCCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_l23.g1 MSMg01no430_l23.g1 CHROMAT_FILE:
MSMg01no430_l23.g1 PHD_FILE: MSMg01no430_l23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:45 2005
         (213 letters)



>mm_chr17_4725207_4725819
          Length = 613

 Score =  383 bits (198), Expect = e-111
 Identities = 207/210 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaacagccctggcaagagggggaggaaggagaacccagctaacctctctctgtgcagga 60
           ||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||
Sbjct: 201 agaacagccctggcaagagtgggaggaaggagaactcagctaacctctatctgtgcagga 260

                                                                       
Query: 61  ctttcatccgaggcagagcccagaggggcttctctgtagttctcctcttttaacttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcatccgaggcagagcccagaggggcttctctgtagttctcctcttttaacttcctg 320

                                                                       
Query: 121 tagccaaaaggcagacctagatggtgctgtgggcctgggagcctcctgagctccccatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagccaaaaggcagacctagatggtgctgtgggcctgggagcctcctgagctccccatct 380

                                         
Query: 181 gtcctctacaatgtccttgtcctttctcag 210
           ||||||||||||||||||||||||||||||
Sbjct: 381 gtcctctacaatgtccttgtcctttctcag 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)