BAC Information

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BAC

Clone NameMSMg01-431M02
Chromosome4 (Build37)17 (Build37)
Map Location 20,259,953 - 20,260,08117,032,600 - 17,032,987
singlet/doubletsingletsinglet
Overlap geneE130310K16Rik
Upstream geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431M02.T7 (MSMg01no431_m02.b1)MSMg01-431M02.TJ (MSMg01no431_m02.g1)
ACCAG523940AG523941
length773760
length of high quality
(start - end)		132 (142 - 273)388 (74 - 461)
definitionCHROMAT_FILE: MSMg01no431_m02.b1 PHD_FILE: MSMg01no431_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:12 2005CHROMAT_FILE: MSMg01no431_m02.g1 PHD_FILE: MSMg01no431_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:12 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,259,953 - 20,260,081)(17,032,600 - 17,032,987)
sequence
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTGTTTAGACATGAAACCCATATTATTTTCTGGTTTGGTTTCGGT
TTTATGTTTGCTCGCTTGGTCACAAGTCTAACTTGATGTACTTTACAGAG
TGATGTCAACTTCTGAGGGGTTATACTCTTAAGAAAAGTGTCTTTTTCTC
TCAGGGGTCTCTATTGTCACTAATACCTTGGCTTGTGCTGAGATTTTGTT
CCCACATATCCTCTCCATGTTGGAATTTAGTCTGTCTCATGTTTGCATAG
GTGTTTAACATGCTGTCACTTTTTTTTTGAGCACACTATTTTGACATGTC
TAGAACATTCACTACTATCGACATTTTCCCCCTTTTCCTTTTTTTTCTTT
TTTTTTCCTCTTCTTACTCATGCATCTTACATCCTAGTCGTTGCCTTCAC
TCCTGGTCCCCTGTTTCCCATTTTTTTTTCCATATATCTCTCTTCTTTTC
CTCTTCTGTATCCTTTTCTATCCCCTTTGCTCGTTCCCCTTCTCTTTGCC
GCATTTCTTTTTGTTGACTTTCACCTTTTCTTCCTTTTCTTCCGCCTTTC
ACTTTCTATACCTTTTCTAACTACAAATAATATTCCACTCCTTCACCCTT
TCCAATCTTTTGTGAATCCATTTTCCCCCTTCCACTCTTTTTTCCCCGTT
TTTCCTGTTCTCCTTACTCCGTTTGTTTTTTTATTTTCTTCGCCTTTTAT
CGCGTTCCATTTATCTCTACTTT

TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCATGGATATTAACATGTCTAAAG
GGAGGGCACTGGGTATTCACCTTGTCTAAAGAGAAGACACAGAAAGTCTT
GTTATTAGTTATGTTAGGAACTTAAAGTTTGAATTGATACAACTTTGTAA
GGTGAATAAACAGCTTTTGGTCATTTATTTGTTAATATGTCCAACAAATG
TTTAATTATAAATTACATCTTTAAATAACTGATGTCACTCTATCCTTTTA
TTTCAGTGAATATATCAAATTATGCAATTGAGTATCTAATTTGGAATAAA
ATTTTGTATCTGGGGTAACTTGGTAGAAAATTTAACAATGATATAAATTG
TCATTAAGTTGTTTATAGTGATTTGTCTCTAGTAAATTGACTATGTGGTC
ATTTCTTCAGTCTCTACTCCACACTTTGCCTCTGTAACTCCTTTATTTTT
CGCTTTCTCAATGACTGTCTTTCTGATTATAGTTAGTGTGTTATTTCCCC
TGCCTTTTTCGCTTTCCTTTTCTGCCTACTTTTTTCTCTTCTGCTTTTCA
TCTCCATTTTCCCTTTTCTTTTTTTCCCTTTCCTCCCCTCTCCATTTCTC
TTATACTCTTCTCTTTTTTTCCTCCGATTCACTTTCTCTTTCTTTTCTCT
TCTTTCTACCCCTTCTTCTTTTTTTCCTTCACATCTTCTTCTTTCTTCCT
CTTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_m02.b1 MSMg01no431_m02.b1 CHROMAT_FILE:
MSMg01no431_m02.b1 PHD_FILE: MSMg01no431_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:12 2005
         (132 letters)



>mm_chr4_20259750_20260281
          Length = 532

 Score =  180 bits (93), Expect = 3e-50
 Identities = 120/129 (93%)
 Strand = Plus / Minus

                                                                       
Query: 4   acagagtgatgtcaacttctgaggggttatactcttaagaaaagtgtctttttctctcag 63
           |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 332 acagagtgttgtcaacttctgaaaggttatactcttaagaaaagtgtctttttctctcag 273

                                                                       
Query: 64  gggtctctattgtcactaataccttggcttgtgctgagattttgttcccacatatcctct 123
           || || || |||||| |||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 272 ggctccctgttgtcaataatcccttggcttgtgctgagattttgttcccacataccctct 213

                    
Query: 124 ccatgttgg 132
           |||||||||
Sbjct: 212 ccatgttgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no431_m02.g1 MSMg01no431_m02.g1 CHROMAT_FILE:
MSMg01no431_m02.g1 PHD_FILE: MSMg01no431_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:12 2005
         (388 letters)



>mm_chr17_17032400_17033187
          Length = 788

 Score =  750 bits (388), Expect = 0.0
 Identities = 388/388 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgcatggatattaacatgtctaaagggagggcactgggtattcaccttgtctaaagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 catgcatggatattaacatgtctaaagggagggcactgggtattcaccttgtctaaagag 529

                                                                       
Query: 61  aagacacagaaagtcttgttattagttatgttaggaacttaaagtttgaattgatacaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aagacacagaaagtcttgttattagttatgttaggaacttaaagtttgaattgatacaac 469

                                                                       
Query: 121 tttgtaaggtgaataaacagcttttggtcatttatttgttaatatgtccaacaaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tttgtaaggtgaataaacagcttttggtcatttatttgttaatatgtccaacaaatgttt 409

                                                                       
Query: 181 aattataaattacatctttaaataactgatgtcactctatccttttatttcagtgaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aattataaattacatctttaaataactgatgtcactctatccttttatttcagtgaatat 349

                                                                       
Query: 241 atcaaattatgcaattgagtatctaatttggaataaaattttgtatctggggtaacttgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 atcaaattatgcaattgagtatctaatttggaataaaattttgtatctggggtaacttgg 289

                                                                       
Query: 301 tagaaaatttaacaatgatataaattgtcattaagttgtttatagtgatttgtctctagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 tagaaaatttaacaatgatataaattgtcattaagttgtttatagtgatttgtctctagt 229

                                       
Query: 361 aaattgactatgtggtcatttcttcagt 388
           ||||||||||||||||||||||||||||
Sbjct: 228 aaattgactatgtggtcatttcttcagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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