Query= MSMg01no433_j15.b1 MSMg01no433_j15.b1 CHROMAT_FILE:
MSMg01no433_j15.b1 PHD_FILE: MSMg01no433_j15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:44 2005
(409 letters)
>mm_chr17_15278529_15279337
Length = 809
Score = 696 bits (360), Expect = 0.0
Identities = 408/452 (90%), Gaps = 43/452 (9%)
Strand = Plus / Minus
Query: 1 gaatatgcacagggaaggccaggaaggaaggtgtgccagtgccagaactgagagacacag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 gaatatgcacagggaaggccaggaaggaaggtgtgccagtgccagaactgagagacacag 400
Query: 61 tgtggcatgagccatgtggagacaccacagtgttggtcaatcaagactgtatgcatgagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtggcatgagccatgtggagacaccacagtgttggtcaatcaagactgtatgcatgagg 340
Query: 121 catgtggagacaccacatgttggtcaagactgtatgcatgaggcatgtggagataccacg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 catgtggagacaccacatgttggtcaagactgtatgcatgaggcatgtggagataccacg 280
Query: 181 tgttggtcaggagtgtatgcatgaggcatgtggagac----------------------- 217
||||||||||||||||||||||||||||||||||||
Sbjct: 279 agttggtcaggagtgtatgcatgaggcatgtggagacaccacgtgttggtcaggcctgta 220
Query: 218 --------------------accatgtgttggtcaggactgtatgcatgagccatatgga 257
||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tgcatgaggcatgtggagataccatgtgttggtcaggactgtatgcatgagccatatgga 160
Query: 258 gacactgtccgctcaactaggactgtgagaaactttaggggagagcctgattgatcagaa 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gacactgtccgctcaactaggactgtgagaaactttaggggagagcctgattgatcagaa 100
Query: 318 actcagaagggcaacacacacctgattgctgcactttgaactggggtttctctctagatc 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 actcagaagggcaacacacacctgattgctgcactttgaactggggtttctctctagatc 40
Query: 378 ttgcttacaagacaggttgttttctgttgttg 409
||||||||||||||||||||||||||||||||
Sbjct: 39 ttgcttacaagacaggttgttttctgttgttg 8
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_j15.g1 MSMg01no433_j15.g1 CHROMAT_FILE:
MSMg01no433_j15.g1 PHD_FILE: MSMg01no433_j15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:44 2005
(344 letters)
>mm_chr17_15171939_15172682
Length = 744
Score = 634 bits (328), Expect = 0.0
Identities = 340/344 (98%)
Strand = Plus / Plus
Query: 1 ttagaattgaaaaaagcatgctaggatttttttttaacatgtttagttttttgctttaat 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaattgaaaacagcatgctaggatttttttttaacatgtttagttttttgctttaat 260
Query: 61 attcattagggcaattaattttactttttggtttatttatttatttaccagcagttgatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcattagggcaattaattttactttttggtttatttatttatttaccagcagttgatt 320
Query: 121 gtgtatgctgtggtattaaagtaactaagacacacataaacatacacgttcaaatttgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtatgctgtggtattaaagtaactaagacacacataaacatacacgttcaaatttgtg 380
Query: 181 tgttcatatctatttatgtgctagcctaactgaagagcagttcactgagatgtatagatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttcatatctatttatgtgctagcctaactgaagagcagttcactgagatgtatagatt 440
Query: 241 tggtatttagcttatttcagcacacaatttttttatttgtaagtttttaataataaaatt 300
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgggatttagtttatttcagcacacaatttttttatttgtaagtttttaataataaaatt 500
Query: 301 tattaaaattcgagggctgaagatcaaatccagggcctcaccca 344
|||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tattaaaattcgagggctgaagatcaaacccagggcctcaccca 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
