BAC Information

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BAC

Clone NameMSMg01-434G18
Chromosome17 (Build37)
Map Location 51,038,023 - 51,038,499
singlet/doubletsinglet
Overlap geneTbc1d5
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl, Plcl2, EG654432
Downstream geneLOC100043451, LOC100043452, Satb1, EG628919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434G18.T7 (MSMg01no434_g18.b1)MSMg01-434G18.TJ (MSMg01no434_g18.g1)
ACCAG525970AG525971
length752747
length of high quality
(start - end)		477 (63 - 539)536 (68 - 603)
definitionCHROMAT_FILE: MSMg01no434_g18.b1 PHD_FILE: MSMg01no434_g18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:50 2005CHROMAT_FILE: MSMg01no434_g18.g1 PHD_FILE: MSMg01no434_g18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGGCGCTGTACGACTCACTATATCCAGAGGATCCGCGGAATTCTTTT
TTATTTCCTAGAAATTAAATTTTACATGTTCAAATTGAATGCATGAATTA
ATTTGTGAACTATGAAGCTTTGGAGTATTTGCTAGTAGCAGGCAGGTTTC
CTGATTGTTTTCTTAGGAGTTGGTGACATGGTGTACAGTTCCATTGTTTA
CAAACCTTAAGGCTATTCAGAGCTTTACAGAAGGATGTTCTGGGTATAAG
TAACAGAAGGGGGACAAAGAAGACTCCTGTGTTTCCAGTTCACCCTTGTG
TCCTCCCTGCATTGTTTTTGGAGCATAATATAAGGGGGGCAGGCAGCAAA
GCTTTGCCTGCAAAGGTTTCAACCTGAGAGGTTCAAAGTAAAGAACAAAT
AATCTATGCAGCTATCTATAGAACAGACAACACACGTGGAAATGCTTTCA
AACAAGGCCATGAATCACCAAAGCAGAAAGTTCACATCTAACTCCAGCTG
CCCTCCCAGGTAGGGAGATAGCAGCATGATTGCCCGAGATACAGGTATAG
CCAAGGAGCTGGACAACGCAGCCCTCTTAGGACATCTAAGATTTTGTCGG
CTAAGACACTTATTACTGATTGAGAGCATGTTAGCCTGGCCCGAAAATAG
ATGTATTGGCTTTCATAGAGTTTGGGTTAAACCCCTAACACCTAGCTTTT
TCTGTTTTCTTTGTGAGTTAACCGTATTCCTCGGTTGATTCAATATTCCC
CT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAATGAAATGAAAACAGAAAGTACCCAAACTTAT
AGGACATGAAAGCACTTCTAAGAGGAAAATTCACAGCACTAAGTACCTTC
ATAAAGAAATTGGAGATATCCTACATAGCAACTTAACAGCACACCTGAAA
TCTCTAGAACAAAAAGAAGCAATCTCACCCAAGAGGAGTAGAAGGCAGGA
AACAATCAAACTCAGGAATCAACCCAGGGATGCAGGGATGGTTCTATGTA
TGAATGTCTATCAGTGTTATTCACCACATTAACAGATTTAAAAAAAAAAC
ACATGATCATCTTATTAGATGTGGAAGAAGCCGCCTTTGACAAAATACAA
CACCTCTTCATATTAAAAGACTTAAGGAGATCAGAGTTTCAAGACAAGTA
CCTAAAGATAATAAAAGCCAATAGCCAACATCAAATTAAATGGAGAGAAA
CTTGAAGCAATCCAACTAAAATCAGGGACAAGACAAGGCTGCCCACTCTC
TCCCTGTCTATTCAATATAGTAGTTAATATTGTAGCTAGAGGAATGAGAC
AACCAAAGGAGATCAAAGCAATACCAATTGGAAAGGAAGACATCAAAGTA
TCAATATTCAAGATTGATATGATAGTATACCTAAATGACCCCCCAAATTT
TAGCAGAGAAAGCATCTTCAATAATAGGTTAGCCTTACTGGCTGGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_g18.b1 MSMg01no434_g18.b1 CHROMAT_FILE:
MSMg01no434_g18.b1 PHD_FILE: MSMg01no434_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:50 2005
         (477 letters)



>mm_chr17_51037823_51038699
          Length = 877

 Score =  845 bits (437), Expect = 0.0
 Identities = 467/481 (97%), Gaps = 8/481 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattaaattttacatgttcaaattgaatgcatgaattaatttgtgaactatgaagctttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattaaattttacatgttcaaattgaatgcatgaattaatttgtgaactatgaagctttg 260

                                                                       
Query: 61  gagtatttgctagtagcaggcaggtttcctgattgttttcttaggagttggtgacatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagtatttgctagtagcaggcaggtttcctgattgttttcttaggagttggtgacatggt 320

                                                                       
Query: 121 gtacagttccattgtttacaaaccttaaggctattcagagctttacagaaggatgttctg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacagttccattgtttacaaaccttaaggctattcagagctttacagaaggatgttctg 380

                                                                       
Query: 181 ggtataagtaacagaagggggacaaagaagactcctgtgtttccagttcacccttgtgtc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtataagtaacagaagggggataaagaagactcctgtgtttccagttcacccttgtgtc 440

                                                                       
Query: 241 ctccctgcattg----tttttggagcataatataaggggggcaggcagcaaagctttgcc 296
           ||||||||||||    |    |||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 ctccctgcattgggagt----ggagcataatataaggggggcaggcagcaatgctttgcc 496

                                                                       
Query: 297 tgcaaaggtttcaacctgagaggttcaaagtaaagaacaaataatctatgcagctatcta 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tgcaaaggtttcaacctgagaggttcaaagtaaagaacaaataatctatgcagctatcta 556

                                                                       
Query: 357 tagaacagacaacacacgtggaaatgctttcaaacaaggccatgaatcaccaaagcagaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tagaacagacaacacacgtggaaatgctttcaaacaaggccatgaatcaccaaagcagaa 616

                                                                       
Query: 417 agttcacatctaactccagctgccctcccaggtagggagatagcagcatgattgcccgag 476
           ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||
Sbjct: 617 agttcacatctaactccagctgccctcacaggcagggagatagcagcatgattgcctgag 676

            
Query: 477 a 477
           |
Sbjct: 677 a 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space:   404889
Effective search space used:   404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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