BAC Information

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BAC

Clone NameMSMg01-434H11
Chromosome17 (Build37)
Map Location 30,590,767 - 30,752,314
singlet/doubletdoublet
Overlap geneBtbd9, Glo1, LOC666942
Upstream genePim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1, LOC100042885, LOC100042888, Zfand3, EG623169
Downstream gene1700097N02Rik, Dnahc8, Glp1r, Umodl1, Abcg1, Tff3, Tff2, LOC100042904, Tff1, Tmprss3, Ubash3a, LOC100042906, Tsga2, EG667056, Slc37a1, Pde9a, Wdr4, 1500032D16Rik, Pknox1, Cbs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434H11.T7 (MSMg01no434_h11.b1)MSMg01-434H11.TJ (MSMg01no434_h11.g1)
ACCAG526004AG526005
length734749
length of high quality
(start - end)		249 (63 - 311)441 (70 - 510)
definitionCHROMAT_FILE: MSMg01no434_h11.b1 PHD_FILE: MSMg01no434_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:53 2005CHROMAT_FILE: MSMg01no434_h11.g1 PHD_FILE: MSMg01no434_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,752,066 - 30,752,314)(30,590,767 - 30,591,207)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTA
GAATCCACTGGAATTCATAGTTTCTTAAATGGAAACCAATTCTAAATTGC
TCTTCCCCCACAATCCCTATATATTCTTCTGCTTGTATATATAGATTAAC
ATTTTCAGTTTTAAAAAAAGGTAATAAGCCGGGCAGTGCTGGCGCACACC
TTTAATCTCAGCACTTGGGATGCAGAGGCAGGTGGATTTCTGAGTTCTGG
GCCACTCTGTAGAGTGCAGCCAGGACTACACAGAGAAACCCTGTCTTGAA
AAACAAAAAACTTTTTTCATAAAACCCAAAAAAAACCCCAAAAAATAGTA
TAAAATATTTATGCTATATATGAAGAAATAAAGAATAATACAGTGACCAT
GTGCTTGCCTAATGTGAGCCTTAAATTGAAGCATGGTGGACTCTTAAATT
TCTTGCAGATCTCCCAGCTACCTTTTTCTTCGATGCTGCTCCTTAGAGGA
AATCCTGTCCTTGAAGAACTTGTTTATTTCCAGGAGCTTCCAGACTCCAC
AACTAGATTGCGTTTGGCTAGATATAATCCACACCCTATATTGCTTTTGA
TATTTTAAGTCTTCTGGGAAAAAAAGTGTGCCTGTGTGTAGCTTGTTCTA
CCTATTTATCTTATATTGGCTTCTTCCATATGTCCACCAAGTTGTGGCGT
GTGTGAAAACCTGGCTATAGGGGTGTATCTTGAC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTAAAAACCTGTTAACCCTCAGTGTGCTGA
AAGACTGCATTTTCCGTACAAAATCACCTTTCAAGCTTTCCATTTAAAAT
TTCATTCCCAAAATATTGCCATGCACATAAAAATTACAATGATATAAAAG
TATGATAAACAGTTGATGAACCTTGTTTATAGGATTTTGGAAAACCTAAA
CAATTTAAATGTAGAATTTTATCTAAAAATAAGGAGATATTTATGTACTT
TAGCGCTTAAAATTTCTTCTAATTATGAACAAAATCTCCAGAGTTTAGGA
AAGTAAGATAGCTTGTTTCGAGCTAACAATTATTTTGAGAGAGCAAAAGT
TTCTTTCTCCAGCACCTGCAGAAACAGTGTTTACTGAGAAAGAATGACTT
GTGTCTACAGACAGAGGGCTGTAATGGGCAGTTTTGGTGGAACACATCAC
AGCAGTGCAAGCCAGCTGCCACAAACCTGTCGTCTGGTTTTGACTTGAAC
TCATCTGATTTCTGAGAGCAGTCAGAGCTTGGAAAACAGCGGGGCATTTG
CTTTGCTGAATACTGAAAGACAATTGTGGCCATGGTCTGGCCTCCCAAGG
CCCCCCCCTTTTATTTCTGAAAAAAAAAAATTCCTCATTTCCCTCTCCGT
GCCAAGAATAAAGTACTTCTATTGCACATTTCCCCTCCTCCTCCAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_h11.b1 MSMg01no434_h11.b1 CHROMAT_FILE:
MSMg01no434_h11.b1 PHD_FILE: MSMg01no434_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:53 2005
         (249 letters)



>mm_chr17_30752001_30752649
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcatagtttcttaaatggaaaccaattctaaattgctcttcccccacaatccctatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 attcatagtttcttaaatggaaaccaattctaaattgctcttcccccacaatccctatat 255

                                                                       
Query: 61  attcttctgcttgtatatatagattaacattttcagttttaaaaaaaggtaataagccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attcttctgcttgtatatatagattaacattttcagttttaaaaaaaggtaataagccgg 195

                                                                       
Query: 121 gcagtgctggcgcacacctttaatctcagcacttgggatgcagaggcaggtggatttctg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 gcagtgctggtgcacacctttaatctcagcacttgggatgcagaggcaggtggatttctg 135

                                                                       
Query: 181 agttctgggccactctgtagagtgcagccaggactacacagagaaaccctgtcttgaaaa 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 agttctaggccactctgtagagtgcagccaggactacacagagaaaccctgtcttgaaaa 75

                    
Query: 241 acaaaaaac 249
           |||||||||
Sbjct: 74  acaaaaaac 66


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no434_h11.g1 MSMg01no434_h11.g1 CHROMAT_FILE:
MSMg01no434_h11.g1 PHD_FILE: MSMg01no434_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:54 2005
         (441 letters)



>mm_chr17_30590567_30591407
          Length = 841

 Score =  845 bits (437), Expect = 0.0
 Identities = 440/441 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaaaaacctgttaaccctcagtgtgctgaaagactgcattttccgtacaaaatcacct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaaaacctgttaaccctcagtgtgctgaaagactgcattttccgtacaaaatcacct 260

                                                                       
Query: 61  ttcaagctttccatttaaaatttcattcccaaaatattgccatgcacataaaaattacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaagctttccatttaaaatttcattcccaaaatattgccatgcacataaaaattacaa 320

                                                                       
Query: 121 tgatataaaagtatgataaacagttgatgaaccttgtttataggattttggaaaacctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatataaaagtatgataaacagttgatgaaccttgtttataggattttggaaaacctaa 380

                                                                       
Query: 181 acaatttaaatgtagaattttatctaaaaataaggagatatttatgtactttagcgctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaatttaaatgtagaattttatctaaaaataaggagatatttatgtactttagcgctta 440

                                                                       
Query: 241 aaatttcttctaattatgaacaaaatctccagagtttaggaaagtaagatagcttgtttc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaatttcttcgaattatgaacaaaatctccagagtttaggaaagtaagatagcttgtttc 500

                                                                       
Query: 301 gagctaacaattattttgagagagcaaaagtttctttctccagcacctgcagaaacagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagctaacaattattttgagagagcaaaagtttctttctccagcacctgcagaaacagtg 560

                                                                       
Query: 361 tttactgagaaagaatgacttgtgtctacagacagagggctgtaatgggcagttttggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttactgagaaagaatgacttgtgtctacagacagagggctgtaatgggcagttttggtg 620

                                
Query: 421 gaacacatcacagcagtgcaa 441
           |||||||||||||||||||||
Sbjct: 621 gaacacatcacagcagtgcaa 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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