BAC Information

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BAC

Clone NameMSMg01-434M09
Chromosome17 (Build37)
Map Location 50,734,731 - 50,735,043
singlet/doubletsinglet
Overlap genePlcl2
Upstream geneKif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream geneEG654432, Tbc1d5, LOC100043451, LOC100043452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434M09.T7 (MSMg01no434_m09.b1)MSMg01-434M09.TJ (MSMg01no434_m09.g1)
ACCAG526235AG526236
length778826
length of high quality
(start - end)
313 (64 - 376)252 (59 - 310)
definitionCHROMAT_FILE: MSMg01no434_m09.b1 PHD_FILE: MSMg01no434_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:17 2005CHROMAT_FILE: MSMg01no434_m09.g1 PHD_FILE: MSMg01no434_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGACTCACTAATTCGAGAGAGATCCGCGGAATTCAAACC
CTTTACCGATATGTGTGACATCACAGCCCTCCATCACTCTACAGCACTGT
TGCTCTCTAGGCTCCCAGAATCTGAAAAACAGAGCTGGAAGTACAACACT
GTGTGTCAAGGGCCTACTGCTACATCCTGTACCTAGCTGCTAACAGGCTT
CCTAATGCTTGTCAAGTAGTTTGTACTCCTGGATAGCTCATCTCTTCTGA
AACACAAGCTATTTCCTGCAATCAAATATTAAGGTTAATTAGCTACCCCA
TGGCCTACTTTTCTTCTTTTTATCATTCTTTGTTCCATTCTCATATGCCT
AAATCTAGCATAATTTGCTCCAGTATAGAAACTAGCTGTCGCGCCATGCA
TTCCAACCTAGACTACTCTACTCAGTAAAACTCTTCACCACCCTAGATGT
ATAATACATGTACCTGATAGAGCTATTCTCAACTTCTCATGTTATAACTT
CTTACTCTCGACATCTAATACAACCCTCGAACAATAAATTATTTTTCCAC
TGGCATCACTAATCCCTGCTTCCCTCGCCTTCTACTACTTGTCCTAATCT
ATAATATCAAATGCCTGTCTTCTGCTCTTTTCTATCTGTTTCTTTTTTTT
TCCTTGTAACTTTCCAACTTTTTTTCTTTTTTACTTATTTCTTCTTTCCT
TCCTTCTTTAACTCTTTTTTTTCTTTTTTTCACTTTTTTTCTCTTTACTA
TTATTTTTATATCATATTGCTCTTTTTN
GGAGGCCTGGAGGNCGCCTGGTACTAAACATGAGGTGACCTATAGAAGTT
TCGCGAAATTCTGTTAGAGGCTAGAAAAATATCCCGGGAGCCGAAGGGCG
GCCTACACAGCTACAAAATGAGATCGACATAGGATTCCCTTTGACTCGCC
CTGGTTGGGACTACAACATGGTTAAAGGTAGGGAGAGCTTGAAATCTATT
GCCAGGCTCTGGTCTCCAAGGTTCCTCAAAACAGCCCACTAATTTGGCTA
AGATAAGAGAAGGTATATTACGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGATGTTATAGTTTAGAGAGAGAGANNGNTNTNTTNGNNNNNNNTT
TTTTTTTCCCCTCCCACAATAAATGTCAAAATTATCATACTTTCCTCTAC
TTGTCCTCCTCCCTCCCCGTTTTCTCTATTTTATTTTTCCTTTCTTTCTT
CGGCTTATCTCCCTGTGCATCCTCTATCACTTTTTTATTCCCTCCCCTTT
TCTTCTCCCTTCTTCTTCTTCTATATTTTCCTTTTCCCTCCCTCGCTCTT
TTCCTTATTCTTCTTCTTCATTCTCTTTCCTCTTGCTCCTTCTTTTCCCC
TCTACTTCTTTTTCTTATATTTTTTTTTTACTCTTCGTTTGCCTATTTTT
TTNACGCGTTCTGAGAGAATATGCTCGTCTATCTATTTCTTGATGCCCCT
CCTGCTTCCTCGCTGTATTTTATTTATTTTTCCTTCGCTCTTATTCGTTC
ATTGTACATATACGTTATGATCTCTTTTTTCGTATCTTTATTATTCTTCT
TATTCTTCTTCTCCATCTTTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_m09.b1 MSMg01no434_m09.b1 CHROMAT_FILE:
MSMg01no434_m09.b1 PHD_FILE: MSMg01no434_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:17 2005
         (313 letters)



>mm_chr17_50734531_50735243
          Length = 713

 Score =  536 bits (277), Expect = e-157
 Identities = 304/313 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgacatcacagccctccatcactctacagcactgttgctctctaggctcccagaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgtgacatcacagccctccatcactctacagcactgttgctctctaggctcccagaatct 454

                                                                       
Query: 61  gaaaaacagagctggaagtacaacactgtgtgtcaagggcctactgctacatcctgtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gaaaaacagagctggaagtacaacactgtgtgtcaagggcctactgctacatcctgtacc 394

                                                                       
Query: 121 tagctgctaacaggcttcctaatgcttgtcaagtagtttgtactcctggatagctcatct 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 393 tagctgctaacaggcttcctaatgctggtcaagtagtttgtactcctggatagctcatct 334

                                                                       
Query: 181 cttctgaaacacaagctatttcctgcaatcaaatattaaggttaattagctaccccatgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 333 cttctgaaacacaagctatttcctgcaatcaaatattaaggttaattatctaccccctgg 274

                                                                       
Query: 241 cctacttttcttctttttatcattctttgttccattctcatatgcctaaatctagcataa 300
           ||||||   || | ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 273 cctactgacctaccttttatcattctttgttccatcctcatatgcctaaatctagcataa 214

                        
Query: 301 tttgctccagtat 313
           |||||||||||||
Sbjct: 213 tttgctccagtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)