Query= MSMg01no436_f01.b1 MSMg01no436_f01.b1 CHROMAT_FILE:
MSMg01no436_f01.b1 PHD_FILE: MSMg01no436_f01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:21 2005
(626 letters)
>mm_chr17_9487541_9488566
Length = 1026
Score = 1151 bits (595), Expect = 0.0
Identities = 617/625 (98%), Gaps = 3/625 (0%)
Strand = Plus / Plus
Query: 4 ggaattcaacatgtgcacaatgtattttgctcaagtccacaccattccctccatttttat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaacatgtgcacaatgtattttgctcaagtccacaccattccctccatttttat 263
Query: 64 tcatctgctcatattctctcccaacttcctgtgtttttgtttttcctcactaagccactt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcatctgctcatattctctcccaacttcctgtgtttttgtttttcctcactaagccactt 323
Query: 124 ctaagaaagagagtagaaccacctcctggagcatgggcagccactcaggtaggtaccttt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctaagaaagagagtagaaccacctcctggagcatgggcagccactcaggtaggtaccttt 383
Query: 184 cccttgaagaaaacagactcacctgcttgatctttgtcttagggttatcattgttgtgat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cccttgaagaaaacagactcacctgcttgatctttgtcttagggttatcattgttgtgat 443
Query: 244 agaatagcacgaccaaatgcaagttggggaggaaagggtttatttgacttaggtttccac 303
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 444 agaatagcacgaccaaatgcaagttggggaggaaagggtttatttgacttaggcttccac 503
Query: 304 ctcactatcttcattgatggaagccagaatagaaatccattacataatcagccaccaaat 363
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 504 ctcactatcttcattgatggaagccaaaatagaaatccattacataatcagccaccaaat 563
Query: 364 gcagacaccattgcatacgccagcaagattttgctgaaaggaccttgatatagctgtctc 423
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gcagacaccattgcatatgccagcaagattttgctgaaaggaccttgatatagctgtctc 623
Query: 424 ttgtgaggctatgctagtgcctggcaaacacagaagtggatgcttacagtcatctattgg 483
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgtgaggctatgccagtgcctggcaaacacagaagtggatgcttacagtcatctattgg 683
Query: 484 atggaacacagg--cccgcccccccatggaggagctagagaaagtacccaaggaactgaa 541
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 atggaacacagggaccc-cccccccatggaggagctagagaaagtacccaaggaactgaa 742
Query: 542 gggttctgcaatcctataggtggaacaacaatatgaactaaccagtacccccagagctca 601
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gggttctgcaatcctataggtggaacaacaatatgaactaaccagtacccccagagctcg 802
Query: 602 tgactctagctgcatatgtagcaga 626
|||||||||||||||||||||||||
Sbjct: 803 tgactctagctgcatatgtagcaga 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space: 625856
Effective search space used: 625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_f01.g1 MSMg01no436_f01.g1 CHROMAT_FILE:
MSMg01no436_f01.g1 PHD_FILE: MSMg01no436_f01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:21 2005
(527 letters)
>mm_chr17_9671106_9672032
Length = 927
Score = 1011 bits (523), Expect = 0.0
Identities = 526/527 (99%)
Strand = Plus / Minus
Query: 1 catgttccgaagaaacttgttagcttggtcacattagttggagcagacttagagcttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 catgttccgaagaaacttgttagcttggtcacattagttggagcagacttagagcttcta 668
Query: 61 agtttgaggaatttgtaatgagagcaacagcagagaggtcacatctccagggcagagcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agtttgaggaatttgtaatgagagcaacagcagagaggtcacatctccagggcagagcat 608
Query: 121 agtctgtgctcattcaggcttctagggacatggtattgctcagctttttagttcgtgcct 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agcctgtgctcattcaggcttctagggacatggtattgctcagctttttagttcgtgcct 548
Query: 181 gcattagtcctcatttcttttattatagagactactctttaggcgctgagtccttctatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gcattagtcctcatttcttttattatagagactactctttaggcgctgagtccttctatg 488
Query: 241 tccttaacacaggctctggttacagggtgcccattcagataatccagaacaatctcagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tccttaacacaggctctggttacagggtgcccattcagataatccagaacaatctcagag 428
Query: 301 tatcaaccacagcactgaaaaagtcccctttgtaatagatatgtcacttatgcattctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tatcaaccacagcactgaaaaagtcccctttgtaatagatatgtcacttatgcattctaa 368
Query: 361 tgatttgtaagagggtgcatgtggagggccgctagcctatcaaagcccttcaagtccttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgatttgtaagagggtgcatgtggagggccgctagcctatcaaagcccttcaagtccttc 308
Query: 421 ttactcccacttgaacttccagcccatgcagtgtgcttctgaaggctttatgatagtatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ttactcccacttgaacttccagcccatgcagtgtgcttctgaaggctttatgatagtatt 248
Query: 481 gcttatattgaatggcatgttagaacaatcacataccttattgttta 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcttatattgaatggcatgttagaacaatcacataccttattgttta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
