GATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTAGTTTTACGTTTATGCATGTTTATGATTTAGTATTTGGAA
AGATATATTCTATTACATCCTGTGTTGCTGTGTGTGTTAATGTTTTTTGA
AGATTTCACTGGCATTTTCCAGTAAGTAGGGGCACTATTGTCATTGTTAG
CCTGAGAACAAAGTTGGTAGTCTTAGTGTCCAAAAGCCATTATCAGAGGA
TGGGCATACAAGTGCGAGGTTATTTCTTAGCTACCCCCACCTTTGTAAGT
GGATTAAGTGTTTAAAGTATGGATGAGCAGAGAGTTTCCTCCAATGGGGG
AAAAATGTCGAGATAAATGTCTTATGTTCAAGCATCATATCTCTTCAAGC
CAACAACAGATAATTTTCACAGATGGACAACTGAACTTCTCCTCATTTCT
CAATCGAATATATCCTGAAAAATAGTTTTCACCTTGGACAATACCAATTT
TTATCAAGTGAAAATAATACTTTTCAATTGCTACAACTTGCCCAAGCTGG
ATTGTATTTGGGGAATGTTTACAGTTGTGTGATTAACAAATAACCCTTTC
TTTAAAACAAAAAACAAAAAACAAAATAGTCAAGTATTAGATGTCATTGA
CAGTATAAAGTTGGATTATAAAGATATAAAAAAATTACCCCAAATCTTTT
TCTTTAAGAATAGACCATGCTTTTCTCTTTTCCATGCTTTTATTGCACAA

NCCATGCAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTACAGAATGAAATAAAGTTTTTACTAAA
ATAAGATGGGCCCGTTATCTGTCTTATTAAGTTTAGGCAATCCCAGGGCA
TTAAAGGCTTGTAGGCAATGGATCAATTATGTTTTTTGTTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTTCATTTTTTATTAGGTATTTAGC
TCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACCC
CCACTCCCCTACCCACTTTTTTTTTATTTTTGGCCCTGGCGTTCCCCTGT
ACTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTTTTTCCAGTGCT
GGTCGACTAGGTCTTCCTTTGATACATATGCAGCTAGAGTCAAGAGCTCC
AGGGCACTGGCTAGCTCATAATGTTGTTCCACCTATACTGTTGCAGATTC
CTTTTATCTCCCTGTTTACTTTCTCTAGCTCCTCCATTGTGATTCCTGTG
ACCCTTCCCTTATCTGACTGTGTATATCCTCTTCTGCGTTTGCTTTCACT
TTGACCTCTCTTCCCCTAGAGTGCCTTCCTCTGTGTCCTTTTCTACAACC
TTCTTTTTTTCTTATGCACACGGTCCTACCTTTTCCGTTGCTTGCTCACC
TTCTGTTCTTTTTGTTTTCTCTCCTCTTTCCTTAATTGCTTCTCTTTCTA
CACTCTCCCT

Query= MSMg01no436_m14.b1 MSMg01no436_m14.b1 CHROMAT_FILE:
MSMg01no436_m14.b1 PHD_FILE: MSMg01no436_m14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:57 2005
         (594 letters)



>mm_chr17_93406834_93407822
          Length = 989

 Score = 1004 bits (519), Expect = 0.0
 Identities = 573/599 (95%), Gaps = 16/599 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctagtttt-acgtttatgcatgtttatgatttagtatttggaaagatatattc 63
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaattctctagttttaaagtttatgcatgtttatgatttagtatttggaaagatatattc 715

                                                                       
Query: 64  tattacatcctgtgttgctgtgtgtgttaatgttttttgaagatttcactggcattttcc 123
           |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 714 tattacatgctgtgttgctgtgtgtgttaatgtttttggaagatttcactggcattttcc 655

                                                                       
Query: 124 agtaagtaggggcactattgtcattgttagcctg-agaacaaagttggtagtcttagtgt 182
           ||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 654 agtaagtcgggacactattgtcattgttagcctgtagaacaaagttggtagtcttagtgt 595

                                                                       
Query: 183 ccaaaagccattatcagaggatgggcatacaagtgcgaggttatttcttagctaccccca 242
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 594 ccaaaagccattatcagaggatgagcatacaagtgcgaggttatttcttagctaccccca 535

                                                                       
Query: 243 cctttgtaagtggattaagtgtttaaagtatggatgagcagagagtttcctccaatgggg 302
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 534 cctttgtaagtggattaagtgtttaaagtatggaagagcagagagtttcctccaatgggg 475

                                                                       
Query: 303 gaaaaatgtcgagataaatgtcttatgttcaagcatcatatctcttcaagccaacaacag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaaaaatgtcgagataaatgtcttatgttcaagcatcatatctcttcaagccaacaacag 415

                                                                       
Query: 363 ataattttcacagatggacaactgaacttctcctcatttctcaatcgaatatatcctgaa 422
           |||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||
Sbjct: 414 ataattttcacagatggacaactgaaattctcctcctttctcaaacgaatatatcctgaa 355

                                                                       
Query: 423 aaatagttttcaccttggacaataccaatttttatcaagtgaaaataatacttttcaatt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaatagttttcaccttggacaataccaatttttatcaagtgaaaataatacttttcaatt 295

                                                                       
Query: 483 gctacaacttgcccaagctggattgtatttggggaatgtttacagttgtgtgattaacaa 542
           |||||||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 294 gctacaacttgcccaagctggattgtatttggggaat-------gttgtgtgattaacaa 242

                                                                      
Query: 543 ataaccctttcttt-------aaaacaaaaaacaaaaaacaaaatagtcaagtattaga 594
           ||||||||||||||       ||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataaccctttctttaaaacaaaaaacaaaaaacaaaaaacaaaatagtcaagtattaga 183


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 989
Length adjustment: 10
Effective length of query: 584
Effective length of database: 979
Effective search space:   571736
Effective search space used:   571736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)