BAC Information

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BAC

Clone NameMSMg01-436N09
Chromosome17 (Build37)
Map Location 3,590,750 - 3,728,166
singlet/doubletdoublet
Overlap geneNox3
Upstream geneLOC383196, LOC100040029, LOC432993, D030013I16Rik, LOC100040128, 1700024P12Rik, LOC435499, LOC224487, Rbm16, LOC665812, LOC621579, LOC624144, Tiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik
Downstream gene4930470H14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436N09.T7 (MSMg01no436_n09.b1)MSMg01-436N09.TJ (MSMg01no436_n09.g1)
ACCAG527809AG527810
length751748
length of high quality
(start - end)		630 (46 - 675)572 (75 - 646)
definitionCHROMAT_FILE: MSMg01no436_n09.b1 PHD_FILE: MSMg01no436_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:01 2005CHROMAT_FILE: MSMg01no436_n09.g1 PHD_FILE: MSMg01no436_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,727,540 - 3,728,166)(3,590,750 - 3,591,318)
sequence
NTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAGGTTTTCACCCATATCCATTGAGATGGATAATGGTTGTGTGC
TTTCATTTTATGCACTTAGCCTTCTTATTGAGAACTGCATTAATCTTGTG
TTTTACAATGGTGAATGCCAAAGAGGTATCTATTCCTCTCTGCTGGAAAA
AAAAAAATCTTGCTTTGGCATATAATGTACTTGCTCCTTCTGCTTATCTT
CTGCTTAGACATTTTTATTAGTATAACTGTTTATTTGGAAGCATAAACCA
AACTCCAGAATCTAAGAAACTTATTTTCCCATGGAGAAGATTTATGATCT
AATATGAAATTTTCCGGCACTTTGAAACTCAGTTTCCAAAGTCAAGAAGA
ATTTGATGTCAGAATGTTTTAAATCATTTTCTAGAAAAGATCTAATACAA
GTGCCTAGAGACACCAAGCTTCCTATAAACGGAGTTAAATTTCAGATTAA
TATGCATGGGTATCAGGCAGTATTAGGTAATTTAACCATCATTAGCTTCC
AATTGTTACGCAGATTAAATAGCTATTTTATTCTAAATGCAAACACAATA
GCACAACACAGACTTATTATTTAATTGTTTTAAATAGACTATAGTTTTGC
ATATTTCTAGTAAGACAGTTTTTCTTAACCCCTCTACAAAAAGCCAGGCT
GCCAGTGTATAAATAAAAACTAGTCAGTGCCAGAAACCAGTACACTAAAG
A

CGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCTTCCTTTCCTCAGTTCTTTTTT
TTTTCTTGCTGCTTTCAGTAGAAGAGACTCACAGTGTTTTAAGCATTGTT
GGAGAGGCATAACACCTCTTCACCCTGCCTCCCCAGGTGATAACAGCGAG
GCAATGTTGACTCTCAGCCTTGCATCTGCCAATATGAAATGAGTAGCAAA
GCTAAAAGGCTATCCCATCCCACCCCACCCCACCCCACCTCACCCCACTG
TACCACATCCTACCCCACCATTTCCCATCCCACCCCTTGCCACCACACCC
CACCCCGTGCCACCTCACCCTATCCCATTCCACCCTACCCCACTGCATCC
CACCCCACTGTACCCCACCCTATCCCACTGCATCCTACCCCATCTCACCA
CACCCTATTGCACTCCTGTTGTAGTAGTGCCTTTCTATCTGAGACAGTCA
GAGTCATCTATCCTCATTTCAAAACCACTCAAAATGGCTAACCACTTCAG
TAACTTTCTCAACTTTTCAAAGTTCTTAGACCTTATGTTTTTCTCCATTG
CAAGTTGAATGAGGAAATATGACACTCTTCAGTGGGTGAACAGGCCAGCG
AAAGTAGGCTATGCACCAGAGTTTCCTAAAACCCCTGATTTTTGTAGCCA
ACCAATGCTTGCCCAAGACCCACTAGTGTAAGTAATAGCTCTGTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_n09.b1 MSMg01no436_n09.b1 CHROMAT_FILE:
MSMg01no436_n09.b1 PHD_FILE: MSMg01no436_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:01 2005
         (630 letters)



>mm_chr17_3727337_3728366
          Length = 1030

 Score = 1137 bits (588), Expect = 0.0
 Identities = 618/628 (98%), Gaps = 2/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcacaggttttcacccatatccattgagatggataatggttgtgtgctttcattt 63
           |||||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ggaattcacagg-ttggagccatatccattgagatggataatggttgtgtgctttcattt 772

                                                                       
Query: 64  tatgcacttagccttcttattgagaactgcattaatcttgtgttttacaatggtgaatgc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tatgcacttagccttcttattgagaactgcattaatcttgtgttttacaatggtgaatgc 712

                                                                       
Query: 124 caaagaggtatctattcctctctgctgg-aaaaaaaaaaatcttgctttggcatataatg 182
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 711 caaagaggtatctattcctctctgctggaaaaaaaaaaaatcttgctttggcatataatg 652

                                                                       
Query: 183 tacttgctccttctgcttatcttctgcttagacatttttattagtataactgtttatttg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tacttgctccttctgcttatcttctgcttagacatttttattagtataactgtttatttg 592

                                                                       
Query: 243 gaagcataaaccaaactccagaatctaagaaacttattttcccatggagaagatttatga 302
           |||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||
Sbjct: 591 gaagcataaaccaaactccagaatctaagaaacagaagttcccatggagaagatttatga 532

                                                                       
Query: 303 tctaatatgaaattttccggcactttgaaactcagtttccaaagtcaagaagaatttgat 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 531 tctaatatgaaattttccggcactttgaaactcagtttccaaagtcaagaagaattcgat 472

                                                                       
Query: 363 gtcagaatgttttaaatcattttctagaaaagatctaatacaagtgcctagagacaccaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gtcagaatgttttaaatcattttctagaaaagatctaatacaagtgcctagagacaccaa 412

                                                                       
Query: 423 gcttcctataaacggagttaaatttcagattaatatgcatgggtatcaggcagtattagg 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gcttcctataaacggagttaaatttcagattaatatgcatgggtatcaggcagtattagg 352

                                                                       
Query: 483 taatttaaccatcattagcttccaattgttacgcagattaaatagctattttattctaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 taatttaaccatcattagcttccaattgttacgcagattaaatagctattttattctaaa 292

                                                                       
Query: 543 tgcaaacacaatagcacaacacagacttattatttaattgttttaaatagactatagttt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tgcaaacacaatagcacaacacagacttattatttaattgttttaaatagactatagttt 232

                                       
Query: 603 tgcatatttctagtaagacagtttttct 630
           ||||||||||||||||||||||||||||
Sbjct: 231 tgcatatttctagtaagacagtttttct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no436_n09.g1 MSMg01no436_n09.g1 CHROMAT_FILE:
MSMg01no436_n09.g1 PHD_FILE: MSMg01no436_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:01 2005
         (572 letters)



>mm_chr17_3590551_3591522
          Length = 972

 Score = 1077 bits (557), Expect = 0.0
 Identities = 566/569 (99%), Gaps = 1/569 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttcttcctttcctcagttctttttttttt-cttgctgctttcagtagaagagactcaca 59
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 200 tttcttcctttcctcagttctttttttttttcttgctgctttcagtagaagagactcaca 259

                                                                       
Query: 60  gtgttttaagcattgttggagaggcataacacctcttcaccctgcctccccaggtgataa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtgttttaagcattgttggagaggcataacacctcttcaccctgcctccccaggtgataa 319

                                                                       
Query: 120 cagcgaggcaatgttgactctcagccttgcatctgccaatatgaaatgagtagcaaagct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cagcgaggcaatgttgactctcagccttgcatctgccaatatgaaatgagtagcaaagct 379

                                                                       
Query: 180 aaaaggctatcccatcccaccccaccccaccccacctcaccccactgtaccacatcctac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaggctatcccatcccaccccaccccaccccacctcaccccactgtaccacatcctac 439

                                                                       
Query: 240 cccaccatttcccatcccaccccttgccaccacaccccaccccgtgccacctcaccctat 299
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cccaccacatcccatcccaccccttgccaccacaccccaccccgtgccacctcaccctat 499

                                                                       
Query: 300 cccattccaccctaccccactgcatcccaccccactgtaccccaccctatcccactgcat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cccattccaccctaccccactgcatcccaccccactgtaccccaccctatcccactgcat 559

                                                                       
Query: 360 cctaccccatctcaccacaccctattgcactcctgttgtagtagtgcctttctatctgag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cctaccccatctcaccacaccctattgcactcctgttgtagtagtgcctttctatctgag 619

                                                                       
Query: 420 acagtcagagtcatctatcctcatttcaaaaccactcaaaatggctaaccacttcagtaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acagtcagagtcatctatcctcatttcaaaaccactcaaaatggctaaccacttcagtaa 679

                                                                       
Query: 480 ctttctcaacttttcaaagttcttagaccttatgtttttctccattgcaagttgaatgag 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctttctcaacttttcaaagttcttagaccttatgtttttctccattgcaagttgaatgag 739

                                        
Query: 540 gaaatatgacactcttcagtgggtgaaca 568
           |||||||||||||||||||||||||||||
Sbjct: 740 gaaatatgacactcttcagtgggtgaaca 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space:   540644
Effective search space used:   540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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